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comparison gffread.xml @ 4:0232f19d300f draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/gffread commit 82ee6fc860c52c531b7a57bbb346ab1a67a434a5
author devteam
date Sun, 19 Feb 2017 12:09:52 -0500
parents 9f243677c4c6
children 69e0806b63a4
comparison
equal deleted inserted replaced
3:9f243677c4c6 4:0232f19d300f
1 <tool id="gffread" name="gffread" version="@VERSION@.0"> 1 <tool id="gffread" name="gffread" version="@VERSION@.1">
2 <description>Filters and/or converts GFF3/GTF2 records</description> 2 <description>Filters and/or converts GFF3/GTF2 records</description>
3 <macros> 3 <macros>
4 <import>cuff_macros.xml</import> 4 <import>cuff_macros.xml</import>
5 <xml name="fasta_output_select"> 5 <xml name="fasta_output_select">
6 <param name="fa_outputs" type="select" display="checkboxes" multiple="true" label="Select fasta outputs"> 6 <param name="fa_outputs" type="select" display="checkboxes" multiple="true" label="Select fasta outputs">
46 <expand macro="cluster_opts" /> 46 <expand macro="cluster_opts" />
47 </param> 47 </param>
48 </xml> 48 </xml>
49 </macros> 49 </macros>
50 <expand macro="requirements" /> 50 <expand macro="requirements" />
51 <expand macro="stdio" /> 51 <command detect_errors="aggressive">
52 <command>
53 <![CDATA[ 52 <![CDATA[
54 #if $reference_genome.source == 'history': 53 #if $reference_genome.source == 'history':
55 ln -s '$reference_genome.genome_fasta' genomeref.fa && 54 ln -s '$reference_genome.genome_fasta' genomeref.fa &&
56 #end if 55 #end if
57 gffread '$input' 56 gffread '$input'