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comparison gffread.xml @ 1:48fe74f391ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/gffread commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:36:04 -0500
parents 5f6e6582c01d
children 12aeae6d8587
comparison
equal deleted inserted replaced
0:5f6e6582c01d 1:48fe74f391ab
22 <option value="-B">single-exon transcripts are also checked on the opposite strand (-B with -V)</option> 22 <option value="-B">single-exon transcripts are also checked on the opposite strand (-B with -V)</option>
23 --> 23 -->
24 </param> 24 </param>
25 </xml> 25 </xml>
26 <xml name="trackname"> 26 <xml name="trackname">
27 <param name="tname" type="text" value="" size="30" optional="true" label="Trackname to use in the second column of each GFF output line" help="(-t track_name}"> 27 <param name="tname" type="text" value="" optional="true" label="Trackname to use in the second column of each GFF output line" help="(-t track_name}">
28 <validator type="regex">\w+</validator> 28 <validator type="regex">\w+</validator>
29 </param> 29 </param>
30 </xml> 30 </xml>
31 <xml name="merge_opts"> 31 <xml name="merge_opts">
32 <option value="-K">also collapse shorter, fully contained transcripts with fewer introns than the container (-K)</option> 32 <option value="-K">also collapse shorter, fully contained transcripts with fewer introns than the container (-K)</option>
127 <option value="none">No</option> 127 <option value="none">No</option>
128 <option value="filter">Yes</option> 128 <option value="filter">Yes</option>
129 </param> 129 </param>
130 <when value="none"/> 130 <when value="none"/>
131 <when value="filter"> 131 <when value="filter">
132 <param name="range" type="text" value="" size="60" label="Only show transcripts overlapping coordinate range"> 132 <param name="range" type="text" value="" label="Only show transcripts overlapping coordinate range">
133 <help><![CDATA[ 133 <help><![CDATA[
134 (-r [['strand']'chr':]'start'..'end') <br> 134 (-r [['strand']'chr':]'start'..'end') <br>
135 examples: <br> 135 examples: <br>
136 1000..500000 <br> 136 1000..500000 <br>
137 chr1:1000..500000 <br> 137 chr1:1000..500000 <br>