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comparison test-data/Homo_sapiens.GRCh37_19.71.gff3 @ 6:6ea09f60dee9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
author iuc
date Fri, 01 Nov 2019 12:54:52 -0400
parents 5f6e6582c01d
children 4dea02886337
comparison
equal deleted inserted replaced
5:69e0806b63a4 6:6ea09f60dee9
1 # gffread test-data/Homo_sapiens.GRCh37_19.71.gtf -o test-data/Homo_sapiens.GRCh37_19.71.gff3 1 # gffread /tmp/tmpq6d_yfqc/files/9/2/2/dataset_922cd54b-d77c-48fb-abf7-6fc8d8fdb97c.dat -o output.gff3
2 # gffread v0.11.4
2 ##gff-version 3 3 ##gff-version 3
3 19 snRNA transcript 223158 223261 . - . ID=ENST00000410397;geneID=ENSG00000222329;gene_name=U6 4 19 snRNA transcript 223158 223261 . - . ID=ENST00000410397;geneID=ENSG00000222329;gene_name=U6
4 19 snRNA exon 223158 223261 . - . Parent=ENST00000410397 5 19 snRNA exon 223158 223261 . - . Parent=ENST00000410397
5 19 unprocessed_pseudogene transcript 229640 230165 . - . ID=ENST00000587910;geneID=ENSG00000267600;gene_name=AC098474.1 6 19 unprocessed_pseudogene transcript 229640 230165 . - . ID=ENST00000587910;geneID=ENSG00000267600;gene_name=AC098474.1
6 19 unprocessed_pseudogene exon 229640 229709 . - . Parent=ENST00000587910 7 19 unprocessed_pseudogene exon 229640 229709 . - . Parent=ENST00000587910
7 19 unprocessed_pseudogene exon 230084 230165 . - . Parent=ENST00000587910 8 19 unprocessed_pseudogene exon 230084 230165 . - . Parent=ENST00000587910
8 19 processed_pseudogene transcript 239145 239247 . - . ID=ENST00000588755;geneID=ENSG00000267305;gene_name=CTD-3113P16.7 9 19 processed_pseudogene transcript 239145 239247 . - . ID=ENST00000588755;geneID=ENSG00000267305;gene_name=CTD-3113P16.7
9 19 processed_pseudogene exon 239145 239247 . - . Parent=ENST00000588755 10 19 processed_pseudogene exon 239145 239247 . - . Parent=ENST00000588755
10 19 processed_pseudogene transcript 279495 280170 . + . ID=ENST00000589981;geneID=ENSG00000267447;gene_name=VN2R11P 11 19 processed_pseudogene transcript 279495 280170 . + . ID=ENST00000589981;geneID=ENSG00000267447;gene_name=VN2R11P
11 19 processed_pseudogene exon 279495 280170 . + . Parent=ENST00000589981 12 19 processed_pseudogene exon 279495 280170 . + . Parent=ENST00000589981
12 19 protein_coding mRNA 281043 291386 . - . ID=ENST00000269812;geneID=ENSG00000141934;gene_name=PPAP2C 13 19 protein_coding transcript 281043 291386 . - . ID=ENST00000269812;geneID=ENSG00000141934;gene_name=PPAP2C
13 19 protein_coding exon 281043 281537 . - . Parent=ENST00000269812 14 19 protein_coding exon 281043 281537 . - . Parent=ENST00000269812
14 19 protein_coding exon 282134 282310 . - . Parent=ENST00000269812 15 19 protein_coding exon 282134 282310 . - . Parent=ENST00000269812
15 19 protein_coding exon 282752 282809 . - . Parent=ENST00000269812 16 19 protein_coding exon 282752 282809 . - . Parent=ENST00000269812
16 19 protein_coding exon 287474 287751 . - . Parent=ENST00000269812 17 19 protein_coding exon 287474 287751 . - . Parent=ENST00000269812
17 19 protein_coding exon 288020 288171 . - . Parent=ENST00000269812 18 19 protein_coding exon 288020 288171 . - . Parent=ENST00000269812
18 19 protein_coding exon 291285 291386 . - . Parent=ENST00000269812 19 19 protein_coding exon 291285 291386 . - . Parent=ENST00000269812
19 19 protein_coding CDS 281391 281537 . - 0 Parent=ENST00000269812 20 19 protein_coding CDS 281388 281537 . - 0 Parent=ENST00000269812
20 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000269812 21 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000269812
21 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000269812 22 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000269812
22 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000269812 23 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000269812
23 19 protein_coding CDS 288020 288171 . - 2 Parent=ENST00000269812 24 19 protein_coding CDS 288020 288171 . - 2 Parent=ENST00000269812
24 19 protein_coding CDS 291285 291336 . - 0 Parent=ENST00000269812 25 19 protein_coding CDS 291285 291336 . - 0 Parent=ENST00000269812
25 19 protein_coding mRNA 281345 291393 . - . ID=ENST00000434325;geneID=ENSG00000141934;gene_name=PPAP2C 26 19 protein_coding transcript 281345 291393 . - . ID=ENST00000434325;geneID=ENSG00000141934;gene_name=PPAP2C
26 19 protein_coding exon 281345 281537 . - . Parent=ENST00000434325 27 19 protein_coding exon 281345 281537 . - . Parent=ENST00000434325
27 19 protein_coding exon 282134 282310 . - . Parent=ENST00000434325 28 19 protein_coding exon 282134 282310 . - . Parent=ENST00000434325
28 19 protein_coding exon 282752 282809 . - . Parent=ENST00000434325 29 19 protein_coding exon 282752 282809 . - . Parent=ENST00000434325
29 19 protein_coding exon 287474 287751 . - . Parent=ENST00000434325 30 19 protein_coding exon 287474 287751 . - . Parent=ENST00000434325
30 19 protein_coding exon 288020 288171 . - . Parent=ENST00000434325 31 19 protein_coding exon 288020 288171 . - . Parent=ENST00000434325
31 19 protein_coding exon 291326 291393 . - . Parent=ENST00000434325 32 19 protein_coding exon 291326 291393 . - . Parent=ENST00000434325
32 19 protein_coding CDS 281391 281537 . - 0 Parent=ENST00000434325 33 19 protein_coding CDS 281388 281537 . - 0 Parent=ENST00000434325
33 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000434325 34 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000434325
34 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000434325 35 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000434325
35 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000434325 36 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000434325
36 19 protein_coding CDS 288020 288055 . - 0 Parent=ENST00000434325 37 19 protein_coding CDS 288020 288055 . - 0 Parent=ENST00000434325
37 19 protein_coding mRNA 281388 291200 . - . ID=ENST00000327790;geneID=ENSG00000141934;gene_name=PPAP2C 38 19 protein_coding transcript 281388 291200 . - . ID=ENST00000327790;geneID=ENSG00000141934;gene_name=PPAP2C
38 19 protein_coding exon 281388 281537 . - . Parent=ENST00000327790 39 19 protein_coding exon 281388 281537 . - . Parent=ENST00000327790
39 19 protein_coding exon 282134 282310 . - . Parent=ENST00000327790 40 19 protein_coding exon 282134 282310 . - . Parent=ENST00000327790
40 19 protein_coding exon 282752 282809 . - . Parent=ENST00000327790 41 19 protein_coding exon 282752 282809 . - . Parent=ENST00000327790
41 19 protein_coding exon 287474 287751 . - . Parent=ENST00000327790 42 19 protein_coding exon 287474 287751 . - . Parent=ENST00000327790
42 19 protein_coding exon 288020 288171 . - . Parent=ENST00000327790 43 19 protein_coding exon 288020 288171 . - . Parent=ENST00000327790
43 19 protein_coding exon 290952 291200 . - . Parent=ENST00000327790 44 19 protein_coding exon 290952 291200 . - . Parent=ENST00000327790
44 19 protein_coding CDS 281391 281537 . - 0 Parent=ENST00000327790 45 19 protein_coding CDS 281388 281537 . - 0 Parent=ENST00000327790
45 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000327790 46 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000327790
46 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000327790 47 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000327790
47 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000327790 48 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000327790
48 19 protein_coding CDS 288020 288171 . - 2 Parent=ENST00000327790 49 19 protein_coding CDS 288020 288171 . - 2 Parent=ENST00000327790
49 19 protein_coding CDS 290952 291066 . - 0 Parent=ENST00000327790 50 19 protein_coding CDS 290952 291066 . - 0 Parent=ENST00000327790
50 19 protein_coding mRNA 281991 287636 . - . ID=ENST00000586998;geneID=ENSG00000141934;gene_name=PPAP2C 51 19 protein_coding transcript 281991 287636 . - . ID=ENST00000586998;geneID=ENSG00000141934;gene_name=PPAP2C
51 19 protein_coding exon 281991 282310 . - . Parent=ENST00000586998 52 19 protein_coding exon 281991 282310 . - . Parent=ENST00000586998
52 19 protein_coding exon 282752 282809 . - . Parent=ENST00000586998 53 19 protein_coding exon 282752 282809 . - . Parent=ENST00000586998
53 19 protein_coding exon 287474 287636 . - . Parent=ENST00000586998 54 19 protein_coding exon 287474 287636 . - . Parent=ENST00000586998
54 19 protein_coding CDS 282125 282310 . - 0 Parent=ENST00000586998 55 19 protein_coding CDS 282122 282310 . - 0 Parent=ENST00000586998
55 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000586998 56 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000586998
56 19 protein_coding CDS 287474 287636 . - 2 Parent=ENST00000586998 57 19 protein_coding CDS 287474 287636 . - 2 Parent=ENST00000586998
57 19 retained_intron transcript 287161 288530 . - . ID=ENST00000589672;geneID=ENSG00000141934;gene_name=PPAP2C 58 19 retained_intron transcript 287161 288530 . - . ID=ENST00000589672;geneID=ENSG00000141934;gene_name=PPAP2C
58 19 retained_intron exon 287161 287751 . - . Parent=ENST00000589672 59 19 retained_intron exon 287161 287751 . - . Parent=ENST00000589672
59 19 retained_intron exon 288020 288530 . - . Parent=ENST00000589672 60 19 retained_intron exon 288020 288530 . - . Parent=ENST00000589672
60 19 protein_coding mRNA 287474 291382 . - . ID=ENST00000591572;geneID=ENSG00000141934;gene_name=PPAP2C 61 19 protein_coding transcript 287474 291382 . - . ID=ENST00000591572;geneID=ENSG00000141934;gene_name=PPAP2C
61 19 protein_coding exon 287474 287751 . - . Parent=ENST00000591572 62 19 protein_coding exon 287474 287751 . - . Parent=ENST00000591572
62 19 protein_coding exon 288020 288189 . - . Parent=ENST00000591572 63 19 protein_coding exon 288020 288189 . - . Parent=ENST00000591572
63 19 protein_coding exon 291285 291382 . - . Parent=ENST00000591572 64 19 protein_coding exon 291285 291382 . - . Parent=ENST00000591572
64 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000591572 65 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000591572
65 19 protein_coding CDS 288020 288189 . - 2 Parent=ENST00000591572 66 19 protein_coding CDS 288020 288189 . - 2 Parent=ENST00000591572
66 19 protein_coding CDS 291285 291336 . - 0 Parent=ENST00000591572 67 19 protein_coding CDS 291285 291336 . - 0 Parent=ENST00000591572
67 19 antisense transcript 305573 306467 . + . ID=ENST00000591533;geneID=ENSG00000267124;gene_name=CTD-3113P16.5 68 19 antisense transcript 305573 306467 . + . ID=ENST00000591533;geneID=ENSG00000267124;gene_name=CTD-3113P16.5
68 19 antisense exon 305573 305703 . + . Parent=ENST00000591533 69 19 antisense exon 305573 305703 . + . Parent=ENST00000591533
69 19 antisense exon 306057 306467 . + . Parent=ENST00000591533 70 19 antisense exon 306057 306467 . + . Parent=ENST00000591533
70 19 protein_coding mRNA 305575 344793 . - . ID=ENST00000264819;geneID=ENSG00000105556;gene_name=MIER2 71 19 protein_coding transcript 305575 344793 . - . ID=ENST00000264819;geneID=ENSG00000105556;gene_name=MIER2
71 19 protein_coding exon 305575 306711 . - . Parent=ENST00000264819 72 19 protein_coding exon 305575 306711 . - . Parent=ENST00000264819
72 19 protein_coding exon 307119 307536 . - . Parent=ENST00000264819 73 19 protein_coding exon 307119 307536 . - . Parent=ENST00000264819
73 19 protein_coding exon 308577 308665 . - . Parent=ENST00000264819 74 19 protein_coding exon 308577 308665 . - . Parent=ENST00000264819
74 19 protein_coding exon 308801 308925 . - . Parent=ENST00000264819 75 19 protein_coding exon 308801 308925 . - . Parent=ENST00000264819
75 19 protein_coding exon 311845 311939 . - . Parent=ENST00000264819 76 19 protein_coding exon 311845 311939 . - . Parent=ENST00000264819
80 19 protein_coding exon 327133 327256 . - . Parent=ENST00000264819 81 19 protein_coding exon 327133 327256 . - . Parent=ENST00000264819
81 19 protein_coding exon 327864 327989 . - . Parent=ENST00000264819 82 19 protein_coding exon 327864 327989 . - . Parent=ENST00000264819
82 19 protein_coding exon 334400 334542 . - . Parent=ENST00000264819 83 19 protein_coding exon 334400 334542 . - . Parent=ENST00000264819
83 19 protein_coding exon 336083 336173 . - . Parent=ENST00000264819 84 19 protein_coding exon 336083 336173 . - . Parent=ENST00000264819
84 19 protein_coding exon 344774 344793 . - . Parent=ENST00000264819 85 19 protein_coding exon 344774 344793 . - . Parent=ENST00000264819
85 19 protein_coding CDS 306693 306711 . - 1 Parent=ENST00000264819 86 19 protein_coding CDS 306690 306711 . - 1 Parent=ENST00000264819
86 19 protein_coding CDS 307119 307536 . - 2 Parent=ENST00000264819 87 19 protein_coding CDS 307119 307536 . - 2 Parent=ENST00000264819
87 19 protein_coding CDS 308577 308665 . - 1 Parent=ENST00000264819 88 19 protein_coding CDS 308577 308665 . - 1 Parent=ENST00000264819
88 19 protein_coding CDS 308801 308925 . - 0 Parent=ENST00000264819 89 19 protein_coding CDS 308801 308925 . - 0 Parent=ENST00000264819
89 19 protein_coding CDS 311845 311939 . - 2 Parent=ENST00000264819 90 19 protein_coding CDS 311845 311939 . - 2 Parent=ENST00000264819
90 19 protein_coding CDS 312191 312272 . - 0 Parent=ENST00000264819 91 19 protein_coding CDS 312191 312272 . - 0 Parent=ENST00000264819
111 19 retained_intron exon 336083 336173 . - . Parent=ENST00000592722 112 19 retained_intron exon 336083 336173 . - . Parent=ENST00000592722
112 19 retained_intron exon 340514 340599 . - . Parent=ENST00000592722 113 19 retained_intron exon 340514 340599 . - . Parent=ENST00000592722
113 19 retained_intron transcript 334115 344798 . - . ID=ENST00000587966;geneID=ENSG00000105556;gene_name=MIER2 114 19 retained_intron transcript 334115 344798 . - . ID=ENST00000587966;geneID=ENSG00000105556;gene_name=MIER2
114 19 retained_intron exon 334115 334542 . - . Parent=ENST00000587966 115 19 retained_intron exon 334115 334542 . - . Parent=ENST00000587966
115 19 retained_intron exon 344774 344798 . - . Parent=ENST00000587966 116 19 retained_intron exon 344774 344798 . - . Parent=ENST00000587966
116 19 protein_coding mRNA 361750 376013 . - . ID=ENST00000342640;geneID=ENSG00000105549;gene_name=THEG 117 19 protein_coding transcript 361750 376013 . - . ID=ENST00000342640;geneID=ENSG00000105549;gene_name=THEG
117 19 protein_coding exon 361750 362426 . - . Parent=ENST00000342640 118 19 protein_coding exon 361750 362426 . - . Parent=ENST00000342640
118 19 protein_coding exon 367065 367224 . - . Parent=ENST00000342640 119 19 protein_coding exon 367065 367224 . - . Parent=ENST00000342640
119 19 protein_coding exon 371205 371322 . - . Parent=ENST00000342640 120 19 protein_coding exon 371205 371322 . - . Parent=ENST00000342640
120 19 protein_coding exon 372631 372700 . - . Parent=ENST00000342640 121 19 protein_coding exon 372631 372700 . - . Parent=ENST00000342640
121 19 protein_coding exon 373470 373531 . - . Parent=ENST00000342640 122 19 protein_coding exon 373470 373531 . - . Parent=ENST00000342640
122 19 protein_coding exon 373940 374011 . - . Parent=ENST00000342640 123 19 protein_coding exon 373940 374011 . - . Parent=ENST00000342640
123 19 protein_coding exon 374299 374421 . - . Parent=ENST00000342640 124 19 protein_coding exon 374299 374421 . - . Parent=ENST00000342640
124 19 protein_coding exon 375663 376013 . - . Parent=ENST00000342640 125 19 protein_coding exon 375663 376013 . - . Parent=ENST00000342640
125 19 protein_coding CDS 362203 362426 . - 2 Parent=ENST00000342640 126 19 protein_coding CDS 362200 362426 . - 2 Parent=ENST00000342640
126 19 protein_coding CDS 367065 367224 . - 0 Parent=ENST00000342640 127 19 protein_coding CDS 367065 367224 . - 0 Parent=ENST00000342640
127 19 protein_coding CDS 371205 371322 . - 1 Parent=ENST00000342640 128 19 protein_coding CDS 371205 371322 . - 1 Parent=ENST00000342640
128 19 protein_coding CDS 372631 372700 . - 2 Parent=ENST00000342640 129 19 protein_coding CDS 372631 372700 . - 2 Parent=ENST00000342640
129 19 protein_coding CDS 373470 373531 . - 1 Parent=ENST00000342640 130 19 protein_coding CDS 373470 373531 . - 1 Parent=ENST00000342640
130 19 protein_coding CDS 373940 374011 . - 1 Parent=ENST00000342640 131 19 protein_coding CDS 373940 374011 . - 1 Parent=ENST00000342640
132 19 protein_coding CDS 375663 375970 . - 0 Parent=ENST00000342640 133 19 protein_coding CDS 375663 375970 . - 0 Parent=ENST00000342640
133 19 retained_intron transcript 362058 374620 . - . ID=ENST00000530711;geneID=ENSG00000105549;gene_name=THEG 134 19 retained_intron transcript 362058 374620 . - . ID=ENST00000530711;geneID=ENSG00000105549;gene_name=THEG
134 19 retained_intron exon 362058 362426 . - . Parent=ENST00000530711 135 19 retained_intron exon 362058 362426 . - . Parent=ENST00000530711
135 19 retained_intron exon 367065 367224 . - . Parent=ENST00000530711 136 19 retained_intron exon 367065 367224 . - . Parent=ENST00000530711
136 19 retained_intron exon 374299 374620 . - . Parent=ENST00000530711 137 19 retained_intron exon 374299 374620 . - . Parent=ENST00000530711
137 19 protein_coding mRNA 362200 375970 . - . ID=ENST00000346878;geneID=ENSG00000105549;gene_name=THEG 138 19 protein_coding transcript 362200 375970 . - . ID=ENST00000346878;geneID=ENSG00000105549;gene_name=THEG
138 19 protein_coding exon 362200 362426 . - . Parent=ENST00000346878 139 19 protein_coding exon 362200 362426 . - . Parent=ENST00000346878
139 19 protein_coding exon 367065 367224 . - . Parent=ENST00000346878 140 19 protein_coding exon 367065 367224 . - . Parent=ENST00000346878
140 19 protein_coding exon 371205 371322 . - . Parent=ENST00000346878 141 19 protein_coding exon 371205 371322 . - . Parent=ENST00000346878
141 19 protein_coding exon 372631 372700 . - . Parent=ENST00000346878 142 19 protein_coding exon 372631 372700 . - . Parent=ENST00000346878
142 19 protein_coding exon 373470 373531 . - . Parent=ENST00000346878 143 19 protein_coding exon 373470 373531 . - . Parent=ENST00000346878
143 19 protein_coding exon 374299 374421 . - . Parent=ENST00000346878 144 19 protein_coding exon 374299 374421 . - . Parent=ENST00000346878
144 19 protein_coding exon 375663 375970 . - . Parent=ENST00000346878 145 19 protein_coding exon 375663 375970 . - . Parent=ENST00000346878
145 19 protein_coding CDS 362203 362426 . - 2 Parent=ENST00000346878 146 19 protein_coding CDS 362200 362426 . - 2 Parent=ENST00000346878
146 19 protein_coding CDS 367065 367224 . - 0 Parent=ENST00000346878 147 19 protein_coding CDS 367065 367224 . - 0 Parent=ENST00000346878
147 19 protein_coding CDS 371205 371322 . - 1 Parent=ENST00000346878 148 19 protein_coding CDS 371205 371322 . - 1 Parent=ENST00000346878
148 19 protein_coding CDS 372631 372700 . - 2 Parent=ENST00000346878 149 19 protein_coding CDS 372631 372700 . - 2 Parent=ENST00000346878
149 19 protein_coding CDS 373470 373531 . - 1 Parent=ENST00000346878 150 19 protein_coding CDS 373470 373531 . - 1 Parent=ENST00000346878
150 19 protein_coding CDS 374299 374421 . - 1 Parent=ENST00000346878 151 19 protein_coding CDS 374299 374421 . - 1 Parent=ENST00000346878
156 19 retained_intron exon 373470 373531 . - . Parent=ENST00000528213 157 19 retained_intron exon 373470 373531 . - . Parent=ENST00000528213
157 19 retained_intron exon 373940 374249 . - . Parent=ENST00000528213 158 19 retained_intron exon 373940 374249 . - . Parent=ENST00000528213
158 19 processed_transcript transcript 397589 398941 . + . ID=ENST00000591757;geneID=ENSG00000267443;gene_name=AC010641.1 159 19 processed_transcript transcript 397589 398941 . + . ID=ENST00000591757;geneID=ENSG00000267443;gene_name=AC010641.1
159 19 processed_transcript exon 397589 397633 . + . Parent=ENST00000591757 160 19 processed_transcript exon 397589 397633 . + . Parent=ENST00000591757
160 19 processed_transcript exon 398690 398941 . + . Parent=ENST00000591757 161 19 processed_transcript exon 398690 398941 . + . Parent=ENST00000591757
161 19 protein_coding mRNA 405445 409139 . - . ID=ENST00000332235;geneID=ENSG00000183186;gene_name=C2CD4C 162 19 protein_coding transcript 405445 409139 . - . ID=ENST00000332235;geneID=ENSG00000183186;gene_name=C2CD4C
162 19 protein_coding exon 405445 408401 . - . Parent=ENST00000332235 163 19 protein_coding exon 405445 408401 . - . Parent=ENST00000332235
163 19 protein_coding exon 409006 409139 . - . Parent=ENST00000332235 164 19 protein_coding exon 409006 409139 . - . Parent=ENST00000332235
164 19 protein_coding CDS 407099 408361 . - 0 Parent=ENST00000332235 165 19 protein_coding CDS 407096 408361 . - 0 Parent=ENST00000332235
165 19 retained_intron transcript 416583 419879 . - . ID=ENST00000587423;geneID=ENSG00000129946;gene_name=SHC2 166 19 retained_intron transcript 416583 419879 . - . ID=ENST00000587423;geneID=ENSG00000129946;gene_name=SHC2
166 19 retained_intron exon 416583 417322 . - . Parent=ENST00000587423 167 19 retained_intron exon 416583 417322 . - . Parent=ENST00000587423
167 19 retained_intron exon 418923 419879 . - . Parent=ENST00000587423 168 19 retained_intron exon 418923 419879 . - . Parent=ENST00000587423
168 19 retained_intron transcript 416583 422828 . - . ID=ENST00000588376;geneID=ENSG00000129946;gene_name=SHC2 169 19 retained_intron transcript 416583 422828 . - . ID=ENST00000588376;geneID=ENSG00000129946;gene_name=SHC2
169 19 retained_intron exon 416583 417322 . - . Parent=ENST00000588376 170 19 retained_intron exon 416583 417322 . - . Parent=ENST00000588376
170 19 retained_intron exon 418923 419056 . - . Parent=ENST00000588376 171 19 retained_intron exon 418923 419056 . - . Parent=ENST00000588376
171 19 retained_intron exon 422146 422828 . - . Parent=ENST00000588376 172 19 retained_intron exon 422146 422828 . - . Parent=ENST00000588376
172 19 protein_coding mRNA 416593 460996 . - . ID=ENST00000264554;geneID=ENSG00000129946;gene_name=SHC2 173 19 protein_coding transcript 416593 460996 . - . ID=ENST00000264554;geneID=ENSG00000129946;gene_name=SHC2
173 19 protein_coding exon 416593 417322 . - . Parent=ENST00000264554 174 19 protein_coding exon 416593 417322 . - . Parent=ENST00000264554
174 19 protein_coding exon 418923 419056 . - . Parent=ENST00000264554 175 19 protein_coding exon 418923 419056 . - . Parent=ENST00000264554
175 19 protein_coding exon 422146 422456 . - . Parent=ENST00000264554 176 19 protein_coding exon 422146 422456 . - . Parent=ENST00000264554
176 19 protein_coding exon 425097 425231 . - . Parent=ENST00000264554 177 19 protein_coding exon 425097 425231 . - . Parent=ENST00000264554
177 19 protein_coding exon 430684 430747 . - . Parent=ENST00000264554 178 19 protein_coding exon 430684 430747 . - . Parent=ENST00000264554
181 19 protein_coding exon 436630 436683 . - . Parent=ENST00000264554 182 19 protein_coding exon 436630 436683 . - . Parent=ENST00000264554
182 19 protein_coding exon 438718 438837 . - . Parent=ENST00000264554 183 19 protein_coding exon 438718 438837 . - . Parent=ENST00000264554
183 19 protein_coding exon 438970 439030 . - . Parent=ENST00000264554 184 19 protein_coding exon 438970 439030 . - . Parent=ENST00000264554
184 19 protein_coding exon 440862 440932 . - . Parent=ENST00000264554 185 19 protein_coding exon 440862 440932 . - . Parent=ENST00000264554
185 19 protein_coding exon 460529 460996 . - . Parent=ENST00000264554 186 19 protein_coding exon 460529 460996 . - . Parent=ENST00000264554
186 19 protein_coding CDS 418931 419056 . - 0 Parent=ENST00000264554 187 19 protein_coding CDS 418928 419056 . - 0 Parent=ENST00000264554
187 19 protein_coding CDS 422146 422456 . - 2 Parent=ENST00000264554 188 19 protein_coding CDS 422146 422456 . - 2 Parent=ENST00000264554
188 19 protein_coding CDS 425097 425231 . - 2 Parent=ENST00000264554 189 19 protein_coding CDS 425097 425231 . - 2 Parent=ENST00000264554
189 19 protein_coding CDS 430684 430747 . - 0 Parent=ENST00000264554 190 19 protein_coding CDS 430684 430747 . - 0 Parent=ENST00000264554
190 19 protein_coding CDS 434709 434865 . - 1 Parent=ENST00000264554 191 19 protein_coding CDS 434709 434865 . - 1 Parent=ENST00000264554
191 19 protein_coding CDS 436165 436291 . - 2 Parent=ENST00000264554 192 19 protein_coding CDS 436165 436291 . - 2 Parent=ENST00000264554
205 19 retained_intron exon 436165 436291 . - . Parent=ENST00000589922 206 19 retained_intron exon 436165 436291 . - . Parent=ENST00000589922
206 19 retained_intron exon 436380 436683 . - . Parent=ENST00000589922 207 19 retained_intron exon 436380 436683 . - . Parent=ENST00000589922
207 19 retained_intron exon 438718 438837 . - . Parent=ENST00000589922 208 19 retained_intron exon 438718 438837 . - . Parent=ENST00000589922
208 19 retained_intron exon 438970 439030 . - . Parent=ENST00000589922 209 19 retained_intron exon 438970 439030 . - . Parent=ENST00000589922
209 19 retained_intron exon 440862 441384 . - . Parent=ENST00000589922 210 19 retained_intron exon 440862 441384 . - . Parent=ENST00000589922
210 19 nonsense_mediated_decay mRNA 417200 436258 . - . ID=ENST00000590170;geneID=ENSG00000129946;gene_name=SHC2 211 19 nonsense_mediated_decay transcript 417200 436258 . - . ID=ENST00000590170;geneID=ENSG00000129946;gene_name=SHC2
211 19 nonsense_mediated_decay exon 417200 417322 . - . Parent=ENST00000590170 212 19 nonsense_mediated_decay exon 417200 417322 . - . Parent=ENST00000590170
212 19 nonsense_mediated_decay exon 418923 419056 . - . Parent=ENST00000590170 213 19 nonsense_mediated_decay exon 418923 419056 . - . Parent=ENST00000590170
213 19 nonsense_mediated_decay exon 422146 422379 . - . Parent=ENST00000590170 214 19 nonsense_mediated_decay exon 422146 422379 . - . Parent=ENST00000590170
214 19 nonsense_mediated_decay exon 430684 430747 . - . Parent=ENST00000590170 215 19 nonsense_mediated_decay exon 430684 430747 . - . Parent=ENST00000590170
215 19 nonsense_mediated_decay exon 434709 434865 . - . Parent=ENST00000590170 216 19 nonsense_mediated_decay exon 434709 434865 . - . Parent=ENST00000590170
216 19 nonsense_mediated_decay exon 436165 436258 . - . Parent=ENST00000590170 217 19 nonsense_mediated_decay exon 436165 436258 . - . Parent=ENST00000590170
217 19 nonsense_mediated_decay CDS 434765 434865 . - 2 Parent=ENST00000590170 218 19 nonsense_mediated_decay CDS 434762 434865 . - 2 Parent=ENST00000590170
218 19 nonsense_mediated_decay CDS 436165 436258 . - 0 Parent=ENST00000590170 219 19 nonsense_mediated_decay CDS 436165 436258 . - 0 Parent=ENST00000590170
219 19 processed_transcript transcript 417200 436258 . - . ID=ENST00000591948;geneID=ENSG00000129946;gene_name=SHC2 220 19 processed_transcript transcript 417200 436258 . - . ID=ENST00000591948;geneID=ENSG00000129946;gene_name=SHC2
220 19 processed_transcript exon 417200 417322 . - . Parent=ENST00000591948 221 19 processed_transcript exon 417200 417322 . - . Parent=ENST00000591948
221 19 processed_transcript exon 418923 419056 . - . Parent=ENST00000591948 222 19 processed_transcript exon 418923 419056 . - . Parent=ENST00000591948
222 19 processed_transcript exon 422146 422379 . - . Parent=ENST00000591948 223 19 processed_transcript exon 422146 422379 . - . Parent=ENST00000591948
223 19 processed_transcript exon 430684 430747 . - . Parent=ENST00000591948 224 19 processed_transcript exon 430684 430747 . - . Parent=ENST00000591948
224 19 processed_transcript exon 434709 434865 . - . Parent=ENST00000591948 225 19 processed_transcript exon 434709 434865 . - . Parent=ENST00000591948
225 19 processed_transcript exon 436165 436258 . - . Parent=ENST00000591948 226 19 processed_transcript exon 436165 436258 . - . Parent=ENST00000591948
226 19 nonsense_mediated_decay mRNA 434702 460571 . - . ID=ENST00000590222;geneID=ENSG00000129946;gene_name=SHC2 227 19 nonsense_mediated_decay transcript 434702 460571 . - . ID=ENST00000590222;geneID=ENSG00000129946;gene_name=SHC2
227 19 nonsense_mediated_decay exon 434702 434865 . - . Parent=ENST00000590222 228 19 nonsense_mediated_decay exon 434702 434865 . - . Parent=ENST00000590222
228 19 nonsense_mediated_decay exon 436165 436291 . - . Parent=ENST00000590222 229 19 nonsense_mediated_decay exon 436165 436291 . - . Parent=ENST00000590222
229 19 nonsense_mediated_decay exon 436380 436431 . - . Parent=ENST00000590222 230 19 nonsense_mediated_decay exon 436380 436431 . - . Parent=ENST00000590222
230 19 nonsense_mediated_decay exon 436630 436683 . - . Parent=ENST00000590222 231 19 nonsense_mediated_decay exon 436630 436683 . - . Parent=ENST00000590222
231 19 nonsense_mediated_decay exon 438718 438837 . - . Parent=ENST00000590222 232 19 nonsense_mediated_decay exon 438718 438837 . - . Parent=ENST00000590222
232 19 nonsense_mediated_decay exon 438970 439030 . - . Parent=ENST00000590222 233 19 nonsense_mediated_decay exon 438970 439030 . - . Parent=ENST00000590222
233 19 nonsense_mediated_decay exon 439233 439491 . - . Parent=ENST00000590222 234 19 nonsense_mediated_decay exon 439233 439491 . - . Parent=ENST00000590222
234 19 nonsense_mediated_decay exon 440862 440932 . - . Parent=ENST00000590222 235 19 nonsense_mediated_decay exon 440862 440932 . - . Parent=ENST00000590222
235 19 nonsense_mediated_decay exon 460529 460571 . - . Parent=ENST00000590222 236 19 nonsense_mediated_decay exon 460529 460571 . - . Parent=ENST00000590222
236 19 nonsense_mediated_decay CDS 439401 439491 . - 1 Parent=ENST00000590222 237 19 nonsense_mediated_decay CDS 439398 439491 . - 1 Parent=ENST00000590222
237 19 nonsense_mediated_decay CDS 440862 440932 . - 0 Parent=ENST00000590222 238 19 nonsense_mediated_decay CDS 440862 440932 . - 0 Parent=ENST00000590222
238 19 nonsense_mediated_decay CDS 460529 460571 . - 1 Parent=ENST00000590222 239 19 nonsense_mediated_decay CDS 460529 460571 . - 1 Parent=ENST00000590222
239 19 retained_intron transcript 435771 436534 . - . ID=ENST00000591388;geneID=ENSG00000129946;gene_name=SHC2 240 19 retained_intron transcript 435771 436534 . - . ID=ENST00000591388;geneID=ENSG00000129946;gene_name=SHC2
240 19 retained_intron exon 435771 435961 . - . Parent=ENST00000591388 241 19 retained_intron exon 435771 435961 . - . Parent=ENST00000591388
241 19 retained_intron exon 436165 436291 . - . Parent=ENST00000591388 242 19 retained_intron exon 436165 436291 . - . Parent=ENST00000591388
247 19 processed_transcript exon 436630 436683 . - . Parent=ENST00000590113 248 19 processed_transcript exon 436630 436683 . - . Parent=ENST00000590113
248 19 processed_transcript exon 438718 438837 . - . Parent=ENST00000590113 249 19 processed_transcript exon 438718 438837 . - . Parent=ENST00000590113
249 19 processed_transcript exon 438970 439031 . - . Parent=ENST00000590113 250 19 processed_transcript exon 438970 439031 . - . Parent=ENST00000590113
250 19 rRNA transcript 453134 453245 . + . ID=ENST00000516730;geneID=ENSG00000252539;gene_name=RNA5SP462 251 19 rRNA transcript 453134 453245 . + . ID=ENST00000516730;geneID=ENSG00000252539;gene_name=RNA5SP462
251 19 rRNA exon 453134 453245 . + . Parent=ENST00000516730 252 19 rRNA exon 453134 453245 . + . Parent=ENST00000516730
252 19 protein_coding mRNA 463346 474983 . - . ID=ENST00000315489;geneID=ENSG00000181781;gene_name=ODF3L2 253 19 protein_coding transcript 463346 474983 . - . ID=ENST00000315489;geneID=ENSG00000181781;gene_name=ODF3L2
253 19 protein_coding exon 463346 464364 . - . Parent=ENST00000315489 254 19 protein_coding exon 463346 464364 . - . Parent=ENST00000315489
254 19 protein_coding exon 467649 467762 . - . Parent=ENST00000315489 255 19 protein_coding exon 467649 467762 . - . Parent=ENST00000315489
255 19 protein_coding exon 472394 472501 . - . Parent=ENST00000315489 256 19 protein_coding exon 472394 472501 . - . Parent=ENST00000315489
256 19 protein_coding exon 474621 474983 . - . Parent=ENST00000315489 257 19 protein_coding exon 474621 474983 . - . Parent=ENST00000315489
257 19 protein_coding CDS 463847 464364 . - 2 Parent=ENST00000315489 258 19 protein_coding CDS 463844 464364 . - 2 Parent=ENST00000315489
258 19 protein_coding CDS 467649 467762 . - 2 Parent=ENST00000315489 259 19 protein_coding CDS 467649 467762 . - 2 Parent=ENST00000315489
259 19 protein_coding CDS 472394 472501 . - 2 Parent=ENST00000315489 260 19 protein_coding CDS 472394 472501 . - 2 Parent=ENST00000315489
260 19 protein_coding CDS 474621 474747 . - 0 Parent=ENST00000315489 261 19 protein_coding CDS 474621 474747 . - 0 Parent=ENST00000315489
261 19 protein_coding mRNA 463467 474880 . - . ID=ENST00000382696;geneID=ENSG00000181781;gene_name=ODF3L2 262 19 protein_coding transcript 463467 474880 . - . ID=ENST00000382696;geneID=ENSG00000181781;gene_name=ODF3L2
262 19 protein_coding exon 463467 464364 . - . Parent=ENST00000382696 263 19 protein_coding exon 463467 464364 . - . Parent=ENST00000382696
263 19 protein_coding exon 467649 467762 . - . Parent=ENST00000382696 264 19 protein_coding exon 467649 467762 . - . Parent=ENST00000382696
264 19 protein_coding exon 474621 474880 . - . Parent=ENST00000382696 265 19 protein_coding exon 474621 474880 . - . Parent=ENST00000382696
265 19 protein_coding CDS 463847 464364 . - 2 Parent=ENST00000382696 266 19 protein_coding CDS 463844 464364 . - 2 Parent=ENST00000382696
266 19 protein_coding CDS 467649 467762 . - 2 Parent=ENST00000382696 267 19 protein_coding CDS 467649 467762 . - 2 Parent=ENST00000382696
267 19 protein_coding CDS 474621 474747 . - 0 Parent=ENST00000382696 268 19 protein_coding CDS 474621 474747 . - 0 Parent=ENST00000382696
268 19 retained_intron transcript 464146 472631 . - . ID=ENST00000591681;geneID=ENSG00000181781;gene_name=ODF3L2 269 19 retained_intron transcript 464146 472631 . - . ID=ENST00000591681;geneID=ENSG00000181781;gene_name=ODF3L2
269 19 retained_intron exon 464146 464364 . - . Parent=ENST00000591681 270 19 retained_intron exon 464146 464364 . - . Parent=ENST00000591681
270 19 retained_intron exon 467649 467762 . - . Parent=ENST00000591681 271 19 retained_intron exon 467649 467762 . - . Parent=ENST00000591681
275 19 processed_transcript exon 504745 505342 . + . Parent=ENST00000587541 276 19 processed_transcript exon 504745 505342 . + . Parent=ENST00000587541
276 19 antisense transcript 490046 507813 . - . ID=ENST00000592413;geneID=ENSG00000266933;gene_name=AC005775.2 277 19 antisense transcript 490046 507813 . - . ID=ENST00000592413;geneID=ENSG00000266933;gene_name=AC005775.2
277 19 antisense exon 490046 490353 . - . Parent=ENST00000592413 278 19 antisense exon 490046 490353 . - . Parent=ENST00000592413
278 19 antisense exon 501541 501624 . - . Parent=ENST00000592413 279 19 antisense exon 501541 501624 . - . Parent=ENST00000592413
279 19 antisense exon 507376 507813 . - . Parent=ENST00000592413 280 19 antisense exon 507376 507813 . - . Parent=ENST00000592413
280 19 protein_coding mRNA 496454 505207 . + . ID=ENST00000346144;geneID=ENSG00000099866;gene_name=MADCAM1 281 19 protein_coding transcript 496454 505207 . + . ID=ENST00000346144;geneID=ENSG00000099866;gene_name=MADCAM1
281 19 protein_coding exon 496454 496551 . + . Parent=ENST00000346144 282 19 protein_coding exon 496454 496551 . + . Parent=ENST00000346144
282 19 protein_coding exon 497833 498117 . + . Parent=ENST00000346144 283 19 protein_coding exon 497833 498117 . + . Parent=ENST00000346144
283 19 protein_coding exon 498496 498825 . + . Parent=ENST00000346144 284 19 protein_coding exon 498496 498825 . + . Parent=ENST00000346144
284 19 protein_coding exon 504745 505207 . + . Parent=ENST00000346144 285 19 protein_coding exon 504745 505207 . + . Parent=ENST00000346144
285 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000346144 286 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000346144
286 19 protein_coding CDS 497833 498117 . + 2 Parent=ENST00000346144 287 19 protein_coding CDS 497833 498117 . + 2 Parent=ENST00000346144
287 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000346144 288 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000346144
288 19 protein_coding CDS 504745 504963 . + 2 Parent=ENST00000346144 289 19 protein_coding CDS 504745 504965 . + 2 Parent=ENST00000346144
289 19 protein_coding mRNA 496454 505347 . + . ID=ENST00000215637;geneID=ENSG00000099866;gene_name=MADCAM1 290 19 protein_coding transcript 496454 505347 . + . ID=ENST00000215637;geneID=ENSG00000099866;gene_name=MADCAM1
290 19 protein_coding exon 496454 496551 . + . Parent=ENST00000215637 291 19 protein_coding exon 496454 496551 . + . Parent=ENST00000215637
291 19 protein_coding exon 497833 498117 . + . Parent=ENST00000215637 292 19 protein_coding exon 497833 498117 . + . Parent=ENST00000215637
292 19 protein_coding exon 498496 498825 . + . Parent=ENST00000215637 293 19 protein_coding exon 498496 498825 . + . Parent=ENST00000215637
293 19 protein_coding exon 501669 501929 . + . Parent=ENST00000215637 294 19 protein_coding exon 501669 501929 . + . Parent=ENST00000215637
294 19 protein_coding exon 504745 505347 . + . Parent=ENST00000215637 295 19 protein_coding exon 504745 505347 . + . Parent=ENST00000215637
295 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000215637 296 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000215637
296 19 protein_coding CDS 497833 498117 . + 2 Parent=ENST00000215637 297 19 protein_coding CDS 497833 498117 . + 2 Parent=ENST00000215637
297 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000215637 298 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000215637
298 19 protein_coding CDS 501669 501929 . + 2 Parent=ENST00000215637 299 19 protein_coding CDS 501669 501929 . + 2 Parent=ENST00000215637
299 19 protein_coding CDS 504745 504963 . + 2 Parent=ENST00000215637 300 19 protein_coding CDS 504745 504965 . + 2 Parent=ENST00000215637
300 19 protein_coding mRNA 496500 504965 . + . ID=ENST00000382683;geneID=ENSG00000099866;gene_name=MADCAM1 301 19 protein_coding transcript 496500 504965 . + . ID=ENST00000382683;geneID=ENSG00000099866;gene_name=MADCAM1
301 19 protein_coding exon 496500 496551 . + . Parent=ENST00000382683 302 19 protein_coding exon 496500 496551 . + . Parent=ENST00000382683
302 19 protein_coding exon 498496 498825 . + . Parent=ENST00000382683 303 19 protein_coding exon 498496 498825 . + . Parent=ENST00000382683
303 19 protein_coding exon 504745 504965 . + . Parent=ENST00000382683 304 19 protein_coding exon 504745 504965 . + . Parent=ENST00000382683
304 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000382683 305 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000382683
305 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000382683 306 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000382683
306 19 protein_coding CDS 504745 504963 . + 2 Parent=ENST00000382683 307 19 protein_coding CDS 504745 504965 . + 2 Parent=ENST00000382683
307 19 protein_coding mRNA 507299 519654 . + . ID=ENST00000359315;geneID=ENSG00000141933;gene_name=TPGS1 308 19 protein_coding transcript 507299 519654 . + . ID=ENST00000359315;geneID=ENSG00000141933;gene_name=TPGS1
308 19 protein_coding exon 507299 507844 . + . Parent=ENST00000359315 309 19 protein_coding exon 507299 507844 . + . Parent=ENST00000359315
309 19 protein_coding exon 518889 519654 . + . Parent=ENST00000359315 310 19 protein_coding exon 518889 519654 . + . Parent=ENST00000359315
310 19 protein_coding CDS 507507 507844 . + 0 Parent=ENST00000359315 311 19 protein_coding CDS 507507 507844 . + 0 Parent=ENST00000359315
311 19 protein_coding CDS 518889 519421 . + 1 Parent=ENST00000359315 312 19 protein_coding CDS 518889 519423 . + 1 Parent=ENST00000359315
312 19 retained_intron transcript 507500 510372 . + . ID=ENST00000588278;geneID=ENSG00000141933;gene_name=TPGS1 313 19 retained_intron transcript 507500 510372 . + . ID=ENST00000588278;geneID=ENSG00000141933;gene_name=TPGS1
313 19 retained_intron exon 507500 510372 . + . Parent=ENST00000588278 314 19 retained_intron exon 507500 510372 . + . Parent=ENST00000588278