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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:17:00 -0500
parents e3fe061597ac
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e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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1 <?xml version="1.0"?>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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2 <macros>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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3 <xml name="function">
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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4 <param type="select" label="Function type" name="function_type" display="radio">
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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5 <yield />
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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6 <option value="C">Constant</option>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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7 <option value="L">Linear [f(x) = y + z * x]</option>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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8 <option value="S">Square root [f(x) = y + z * x²]</option>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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9 <option value="G">Natural logarithm [f(x) = y + z * log(x)]</option>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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10 </param>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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11 <param type="integer" label="Constant term (y)" name="constant_term" value="0" />
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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12 <param type="integer" label="Coefficient (z)" name="coefficient_term" value="0" />
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
devteam
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13 </xml>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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14 <xml name="single_paired_selector">
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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15 <param label="Single end or paired reads?" name="paired_selector" type="select">
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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16 <option value="paired_collection">Single collection of paired reads</option>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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17 <option value="paired_list">List of paired reads</option>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
devteam
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18 <option value="paired">Reads are paired</option>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
devteam
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19 <option value="single">Reads are unpaired</option>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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20 </param>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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21 </xml>
e3fe061597ac planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat commit 5a7365750648c26206f05ac7956936c243c2b980
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22 </macros>