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comparison macros.xml @ 9:aec58624706f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
author iuc
date Wed, 04 Dec 2019 06:51:45 -0500
parents 8ba2174315aa
children 766d5f63b0f4
comparison
equal deleted inserted replaced
8:8ba2174315aa 9:aec58624706f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@WRAPPER_VERSION@">1.3.0</token> 3 <token name="@WRAPPER_VERSION@">1.3.1</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.10.6_eaf8fb68">kraken</requirement> 6 <requirement type="package" version="1.1.1">kraken</requirement>
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
9 <xml name="version_command"> 9 <xml name="version_command">
10 <version_command><![CDATA[ 10 <version_command><![CDATA[
11 export LC_ALL=C && kraken --version 11 export LC_ALL=C && kraken --version
22 <citations> 22 <citations>
23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation> 23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
24 </citations> 24 </citations>
25 </xml> 25 </xml>
26 <!-- See the kraken_databases.loc.sample documentation, 26 <!-- See the kraken_databases.loc.sample documentation,
27 this if statement is for backward compatibility as early 27 this if statement is for backward compatibility as early
28 versions of the wrapper assumed the UI facing field name 28 versions of the wrapper assumed the UI facing field name
29 was also part of the directory path --> 29 was also part of the directory path -->
30 <token name="@SET_DATABASE_PATH@">if [ -d '${kraken_database.fields.path}/${kraken_database.fields.name}' ]; then export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}'; fi</token> 30 <token name="@SET_DATABASE_PATH@">if [ -d '${kraken_database.fields.path}/${kraken_database.fields.name}' ]; then export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}'; fi</token>
31 <token name="@INPUT_DATABASE@">--db "\$KRAKEN_DEFAULT_DB"</token> 31 <token name="@INPUT_DATABASE@">--db "\$KRAKEN_DEFAULT_DB"</token>
32 </macros> 32 </macros>