Mercurial > repos > devteam > kraken
view macros.xml @ 4:84d91cbf0c8d draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken/ commit 3abfc7eb2999fa588862b84c453012c811fa8350
author | devteam |
---|---|
date | Mon, 21 Mar 2016 11:57:47 -0400 |
parents | 7c41dbaa9875 |
children | b2392a9dfb01 |
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<?xml version="1.0"?> <macros> <xml name="requirements"> <requirements> <requirement type="package" version="0.10.6_eaf8fb68">kraken</requirement> </requirements> <requirements> <requirement type="package" version="0.10.6-eaf8fb68">kraken</requirement> </requirements> </xml> <xml name="stdio"> <stdio> <exit_code description="Tool exception" level="fatal" range="1:" /> </stdio> </xml> <xml name="version_command"> <version_command>export LC_ALL=C && kraken --version</version_command> </xml> <xml name="input_database"> <param label="Select a Kraken database" name="kraken_database" type="select"> <options from_data_table="kraken_databases"> <validator message="No databases are available built-in" type="no_options" /> </options> </param> </xml> <xml name="citations"> <citations> <citation type="doi">10.1186/gb-2014-15-3-r46</citation> </citations> </xml> <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token> <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token> </macros>