# HG changeset patch # User devteam # Date 1695998313 0 # Node ID 50bd98b3ae5a905738e032c3c364e16ca9f48401 # Parent f03c7ba8d8bc175873239b423335fde101ea2957 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/taxonomy/kraken2tax/ commit 45d0409859aca5b099dba7e0acd472f5703240e1 diff -r f03c7ba8d8bc -r 50bd98b3ae5a kraken2tax.xml --- a/kraken2tax.xml Wed Apr 26 14:11:06 2017 -0400 +++ b/kraken2tax.xml Fri Sep 29 14:38:33 2023 +0000 @@ -1,8 +1,8 @@ - + data to Galaxy taxonomy representation - gawk - gb_taxonomy_tools + gawk + gb_taxonomy_tools | scientific name | +2 | Monera | Monera | in-part | +2 | Procaryotae | Procaryotae | in-part | +2 | Prokaryota | Prokaryota | in-part | +2 | Prokaryotae | Prokaryotae | in-part | +2 | bacteria | bacteria | blast name | +2 | eubacteria | | genbank common name | +2 | not Bacteria Haeckel 1894 | | synonym | +2 | prokaryote | prokaryote | in-part | +2 | prokaryotes | prokaryotes | in-part | +6 | Azorhizobium | | scientific name | +6 | Azorhizobium Dreyfus et al. 1988 emend. Lang et al. 2013 | | authority | +6 | Azotirhizobium | | misspelling | +7 | ATCC 43989 | | type material | +7 | Azorhizobium caulinodans | | scientific name | +7 | Azorhizobium caulinodans Dreyfus et al. 1988 | | synonym | +7 | Azotirhizobium caulinodans | | equivalent name | +7 | CCUG 26647 | | type material | diff -r f03c7ba8d8bc -r 50bd98b3ae5a test-data/tax_dir/nodes.dmp --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tax_dir/nodes.dmp Fri Sep 29 14:38:33 2023 +0000 @@ -0,0 +1,4 @@ +1 | 1 | no rank | | 8 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | | +2 | 2 | superkingdom | | 0 | 0 | 11 | 0 | 0 | 0 | 0 | 0 | | +6 | 6 | genus | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | +7 | 7 | species | AC | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | diff -r f03c7ba8d8bc -r 50bd98b3ae5a tool_data_table_conf.xml.test --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Fri Sep 29 14:38:33 2023 +0000 @@ -0,0 +1,8 @@ + + + + + value, name, path + +