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comparison kraken-report.xml @ 2:c4fb5dc47fce draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit 3abfc7eb2999fa588862b84c453012c811fa8350
author devteam
date Mon, 21 Mar 2016 12:05:59 -0400
parents f2757ab26483
children 9ae975c30dde
comparison
equal deleted inserted replaced
1:688428f6800f 2:c4fb5dc47fce
1 <tool id="kraken-report" name="Kraken-report" version="1.1.0"> 1 <tool id="kraken-report" name="Kraken-report" version="1.2.0">
2 <description> 2 <description>
3 view a sample report of your classification 3 view a sample report of your classification
4 </description> 4 </description>
5
5 <macros> 6 <macros>
6 <import>macros.xml</import> 7 <import>macros.xml</import>
7 </macros> 8 </macros>
9 <expand macro="requirements" />
10 <expand macro="stdio" />
11 <expand macro="version_command" />
8 <command> 12 <command>
9 <![CDATA[ 13 <![CDATA[
10 @SET_DATABASE_PATH@ && 14 @SET_DATABASE_PATH@ &&
11 kraken-report @INPUT_DATABASE@ "${kraken_output}" > "$output_report" 15 kraken-report @INPUT_DATABASE@ "${kraken_output}" > "$output_report"
12 ]]> 16 ]]>
16 <expand macro="input_database" /> 20 <expand macro="input_database" />
17 </inputs> 21 </inputs>
18 <outputs> 22 <outputs>
19 <data format="tabular" name="output_report" /> 23 <data format="tabular" name="output_report" />
20 </outputs> 24 </outputs>
25 <tests>
26 <test>
27 <param name="kraken_output" value="kraken_report_test1.tab" ftype="tabular"/>
28 <param name="kraken_database" value="test_db"/>
29 <output name="output_report" file="kraken_report_test1_output.tab" ftype="tabular"/>
30 </test>
31 </tests>
32
21 <help> 33 <help>
22 <![CDATA[ 34 <![CDATA[
23 35
24 .. class:: warningmark 36 .. class:: warningmark
25 37
40 52
41 The scientific names are indented using spaces, according to the tree 53 The scientific names are indented using spaces, according to the tree
42 structure specified by the taxonomy. 54 structure specified by the taxonomy.
43 ]]> 55 ]]>
44 </help> 56 </help>
45 <expand macro="version_command" />
46 <expand macro="requirements" />
47 <expand macro="stdio" />
48 <expand macro="citations" /> 57 <expand macro="citations" />
49 </tool> 58 </tool>