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comparison macros.xml @ 0:77ca66b1f5e9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
author devteam
date Thu, 23 Jul 2015 10:56:31 -0400
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children 475284b74179
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-1:000000000000 0:77ca66b1f5e9
1 <?xml version="1.0"?>
2 <macros>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="0.10.5">kraken</requirement>
6 </requirements>
7 </xml>
8 <xml name="stdio">
9 <stdio>
10 <exit_code description="Tool exception" level="fatal" range="1:" />
11 </stdio>
12 </xml>
13 <xml name="version_command">
14 <version_command>export LC_ALL=C &amp;&amp; kraken --version</version_command>
15 </xml>
16 <xml name="input_database">
17 <param label="Select a Kraken database" name="kraken_database" type="select">
18 <options from_data_table="kraken_databases">
19 <validator message="No databases are available built-in" type="no_options" />
20 </options>
21 </param>
22 </xml>
23 <xml name="citations">
24 <citations>
25 <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
26 </citations>
27 </xml>
28 <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token>
29 <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token>
30 </macros>