Mercurial > repos > devteam > kraken_translate

diff kraken-translate.xml @ 1:475284b74179 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 3abfc7eb2999fa588862b84c453012c811fa8350
author devteam
date Mon, 21 Mar 2016 12:07:33 -0400
parents 77ca66b1f5e9
children b9971bca4b01
line wrap: on
line diff
--- a/kraken-translate.xml	Thu Jul 23 10:56:31 2015 -0400
+++ b/kraken-translate.xml	Mon Mar 21 12:07:33 2016 -0400
@@ -1,10 +1,13 @@
-<tool id="kraken-translate" name="Kraken-translate" version="1.1.0">
+<tool id="kraken-translate" name="Kraken-translate" version="1.2.0">
     <description>
         convert taxonomy IDs to names
     </description>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <expand macro="version_command" />
     <command>
         <![CDATA[
         @SET_DATABASE_PATH@ &&
@@ -19,6 +22,14 @@
     <outputs>
         <data format="tabular" label="${tool.name} on ${on_string}: Translated classification" name="translated" />
     </outputs>
+    <tests>
+        <test>
+            <param name="input" value="kraken_translate_test1.tab" ftype="tabular"/>
+            <param name="mpa-format" value="false"/>
+            <param name="kraken_database" value="test_db"/>
+            <output name="translated" file="kraken_translate_test1_output.tab" ftype="tabular"/>
+        </test>
+    </tests>
     <help>
         <![CDATA[
 
@@ -45,8 +56,5 @@
 Taxonomy assignments above the superkingdom rank are represented as just "root" when using the ``--mpa-report`` option with kraken-translate.
         ]]>
     </help>
-    <expand macro="requirements" />
-    <expand macro="stdio" />
-    <expand macro="version_command" />
     <expand macro="citations" />
 </tool>