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comparison test-data/lastz_d_test1.out @ 5:bd84ff27bc16 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
author devteam
date Mon, 26 Feb 2018 15:37:53 -0500
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4:60afcc2c1d05 5:bd84ff27bc16
1 # (a LASTZ scoring set, created by "LASTZ --infer")
2
3 bad_score = X:-1764 # used for sub[X][*] and sub[*][X]
4 fill_score = -176 # used when sub[*][*] not otherwise defined
5 gap_open_penalty = 573
6 gap_extend_penalty = 43
7
8 A C G T
9 A 73 -83 -52 -100
10 C -83 100 -176 -52
11 G -52 -176 100 -83
12 T -100 -52 -83 73