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comparison lastz_macros.xml @ 11:37b497aa133f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit 1075d38f2a8eaffb824771a5c4fe70c36aa15f2c
author iuc
date Sun, 02 Jul 2023 12:10:46 +0000
parents 3e1ea2facca6
children
comparison
equal deleted inserted replaced
10:3e1ea2facca6 11:37b497aa133f
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.04.15</token> 2 <token name="@TOOL_VERSION@">1.04.22</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@TARGET_INPUT_COMMAND_LINE@"><![CDATA[ 4 <token name="@TARGET_INPUT_COMMAND_LINE@"><![CDATA[
5 #if $source.ref_source=="history": 5 #if $source.ref_source=="history":
6 #if $source.target.is_of_type('fasta.gz'): 6 #if $source.target.is_of_type('fasta.gz'):
7 <(gunzip -c '${source.target}') 7 <(gunzip -c '${source.target}')
28 <xref type="bio.tools">lastz</xref> 28 <xref type="bio.tools">lastz</xref>
29 </xrefs> 29 </xrefs>
30 </xml> 30 </xml>
31 <xml name="target_input"> 31 <xml name="target_input">
32 <conditional name="source"> 32 <conditional name="source">
33 <param name="ref_source" type="select" label="Select TARGET sequnce(s) to align against" help="If your TARGET is in history, choose 'from your history' option"> 33 <param name="ref_source" type="select" label="Select TARGET sequence(s) to align against" help="If your TARGET is in history, choose 'from your history' option">
34 <option value="cached">locally cached</option> 34 <option value="cached">locally cached</option>
35 <option value="history">from your history</option> 35 <option value="history">from your history</option>
36 </param> 36 </param>
37 <when value="cached"> 37 <when value="cached">
38 <param name="target_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> 38 <param name="target_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team">