Mercurial > repos > devteam > lastz_paired_reads

comparison tool_dependencies.xml @ 2:1d5aabeac76e draft

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Uploaded a tool dependency definition that defines a complex repository dependency on package_lastz_1_02_00.
author devteam
date Fri, 21 Feb 2014 14:25:46 -0500
parents 96825cee5c25
children ecc974513241
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1:39f974d0884e 2:1d5aabeac76e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="lastz" version="1.02.00"> 3 <package name="lastz" version="1.02.00">
4 <install version="1.0"> 4 <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
5 <actions>
6 <action type="download_by_url" target_filename="lastz-distrib-1.02.00.tar.gz">http://www.bx.psu.edu/miller_lab/dist/lastz-1.02.00.tar.gz</action>
7 <action type="shell_command">make</action>
8 <action type="move_file">
9 <source>src/lastz</source>
10 <destination>$INSTALL_DIR/bin</destination>
11 </action>
12 <action type="move_file">
13 <source>src/lastz_D</source>
14 <destination>$INSTALL_DIR/bin</destination>
15 </action>
16 <action type="set_environment">
17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
18 </action>
19 </actions>
20 </install>
21 <readme>
22 LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. </readme>
23 </package> 5 </package>
24 </tool_dependency> 6 </tool_dependency>
25