Mercurial > repos > devteam > megablast_wrapper
diff tool-data/blastdb.loc.sample @ 0:dc7b4acb3fa6 draft
Imported from capsule None
author | devteam |
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date | Mon, 19 May 2014 12:33:49 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/blastdb.loc.sample Mon May 19 12:33:49 2014 -0400 @@ -0,0 +1,31 @@ +#This is a sample file distributed with Galaxy that is used to define a +#list of nucleotide BLAST databases, using three columns tab separated +#(longer whitespace are TAB characters): +# +#<unique_id> <database_caption> <base_name_path> +# +#The captions typically contain spaces and might end with the release date. +#It is important that the actual database name does not have a space in it. +# +#So, for example, if your database is nt and the path to your base name +#is /galaxy/data/blastdb/nt/DDmmmYYYY/nt, then the blastdb.loc entry +#could look like this: +# +#02dec2009 nt 02-Dec-2009 /galaxy/data/blastdb/nt/02dec2009/nt +# +#A /galaxy/data/blastdb/nt/02dec2009 directory would contain all of +#the "nt" blast indexes from ftp://ftp.ncbi.nlm.nih.gov/blast/db/nt* (e.g.): +# +#-rw-r--r-- 1 wychung galaxy 23437408 2008-04-09 11:26 nt.chunk.00.nhr +#-rw-r--r-- 1 wychung galaxy 3689920 2008-04-09 11:26 nt.chunk.00.nin +#-rw-r--r-- 1 wychung galaxy 251215198 2008-04-09 11:26 nt.chunk.00.nsq +#...etc... +# +#The blastdb.loc file should include one entry per line for each database. +# +#See also blastdb_p.loc, used for protein BLAST database. +# +#Note that for backwards compatibility with workflows, the <unique_id> of +#an entry must be the path that was in the original loc file. +#The metadata <unique_id> is the value stored in workflows for "database". +# \ No newline at end of file