Mercurial > repos > devteam > microsats_alignment_level
comparison microsats_alignment_level.xml @ 4:6f8257ad464b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/microsats_alignment_level commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:21:19 -0500 |
| parents | 7852385470f3 |
| children |
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| 3:df7548445f4e | 4:6f8257ad464b |
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| 7 microsats_alignment_level.py $input1 $separation $out_file1 "2way" $mono_threshold $non_mono_threshold $allow_different_units | 7 microsats_alignment_level.py $input1 $separation $out_file1 "2way" $mono_threshold $non_mono_threshold $allow_different_units |
| 8 </command> | 8 </command> |
| 9 <inputs> | 9 <inputs> |
| 10 <page> | 10 <page> |
| 11 <param format="fasta" name="input1" type="data" label="Select data"/> | 11 <param format="fasta" name="input1" type="data" label="Select data"/> |
| 12 <param name="separation" size="10" type="integer" value="10" label="Minimum base pair distance between adjacent microsatellites" | 12 <param name="separation" type="integer" value="10" label="Minimum base pair distance between adjacent microsatellites" |
| 13 help="A value of 10 means: Adjacent microsatellites separated by less than 10 base pairs will be excluded from the output."/> | 13 help="A value of 10 means: Adjacent microsatellites separated by less than 10 base pairs will be excluded from the output."/> |
| 14 <param name="mono_threshold" size="10" type="integer" value="9" label="Minimum Threshold for the number of repeats for mononucleotide microsatellites" | 14 <param name="mono_threshold" type="integer" value="9" label="Minimum Threshold for the number of repeats for mononucleotide microsatellites" |
| 15 help="A value of 9 means: All mononucleotide microsatellites having fewer than 9 repeats will be excluded from the output."/> | 15 help="A value of 9 means: All mononucleotide microsatellites having fewer than 9 repeats will be excluded from the output."/> |
| 16 <param name="non_mono_threshold" size="10" type="integer" value="4" label="Minimum Threshold for the number of repeats for non-mononucleotide microsatellites" | 16 <param name="non_mono_threshold" type="integer" value="4" label="Minimum Threshold for the number of repeats for non-mononucleotide microsatellites" |
| 17 help="A value of 4 means: All non-mononucleotide microsatellites having fewer than 4 repeats will be excluded from the output."/> | 17 help="A value of 4 means: All non-mononucleotide microsatellites having fewer than 4 repeats will be excluded from the output."/> |
| 18 <param name="allow_different_units" size="5" type="select" label="Allow orthologous positions to have different microsatellite repeat units/motifs?"> | 18 <param name="allow_different_units" type="select" label="Allow orthologous positions to have different microsatellite repeat units/motifs?"> |
| 19 <option value="0" selected="true">No</option> | 19 <option value="0" selected="true">No</option> |
| 20 <option value="1">Yes</option> | 20 <option value="1">Yes</option> |
| 21 </param> | 21 </param> |
| 22 </page> | 22 </page> |
| 23 </inputs> | 23 </inputs> |