Mercurial > repos > devteam > microsats_alignment_level
diff test-data/ortho_ms.tab @ 0:d4368a5a3fc7
Imported from capsule None
| author | devteam |
|---|---|
| date | Tue, 01 Apr 2014 10:50:33 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/ortho_ms.tab Tue Apr 01 10:50:33 2014 -0400 @@ -0,0 +1,151 @@ +#Block Seq1_Name Seq1_Start Seq1_End Seq1_Type Seq1_Length Seq1_RepeatNumber Seq1_Unit Seq2_Name Seq2_Start Seq2_End Seq2_Type Seq2_Length Seq2_RepeatNumber Seq2_Unit +5 hg18.chr1 6483 6496 trinucleotide 13 4 GCT panTro2.chr15 100042575 100042588 trinucleotide 13 4 GCT +5 hg18.chr1 7111 7119 dinucleotide 8 4 CT panTro2.chr15 100043212 100043220 dinucleotide 8 4 CT +5 hg18.chr1 6483 6496 trinucleotide 13 4 GCT panTro2.chr15 100042575 100042588 trinucleotide 13 4 GCT +5 hg18.chr1 7111 7119 dinucleotide 8 4 CT panTro2.chr15 100043212 100043220 dinucleotide 8 4 CT +9 hg18.chr1 11258 11267 dinucleotide 9 4 CT panTro2.chr9_random 4677431 4677440 dinucleotide 9 4 CT +10 hg18.chr1 11881 11889 dinucleotide 8 4 TC panTro2.chr15 100031465 100031473 dinucleotide 8 4 TC +10 hg18.chr1 18275 18284 mononucleotide 9 9 A panTro2.chr15 100037854 100037863 mononucleotide 9 9 A +10 hg18.chr1 11881 11889 dinucleotide 8 4 TC panTro2.chr15 100031465 100031473 dinucleotide 8 4 TC +10 hg18.chr1 16317 16329 dinucleotide 12 6 GT panTro2.chr15 100035910 100035921 dinucleotide 11 5 TG +10 hg18.chr1 18275 18284 mononucleotide 9 9 A panTro2.chr15 100037854 100037863 mononucleotide 9 9 A +10 hg18.chr1 18452 18467 mononucleotide 15 15 T panTro2.chr15 100038029 100038042 mononucleotide 13 13 T +12 hg18.chr1 20736 20756 dinucleotide 20 10 TC panTro2.chr15_random 1091184 1091198 dinucleotide 14 7 TC +13 hg18.chr1 20799 20812 dinucleotide 13 6 TC panTro2.chrUn 1510811 1510831 dinucleotide 20 10 TC +13 hg18.chr1 21563 21572 dinucleotide 9 4 AG panTro2.chrUn 1511572 1511581 dinucleotide 9 4 AG +13 hg18.chr1 21671 21681 dinucleotide 10 5 AC panTro2.chrUn 1511678 1511688 dinucleotide 10 5 AC +14 hg18.chr1 23313 23328 mononucleotide 15 15 A panTro2.chrUn 1508926 1508942 mononucleotide 16 16 A +16 hg18.chr1 26215 26228 mononucleotide 13 13 A panTro2.chrUn 135175 135189 mononucleotide 14 14 A +16 hg18.chr1 26657 26667 dinucleotide 10 5 TG panTro2.chrUn 135618 135628 dinucleotide 10 5 TG +16 hg18.chr1 27104 27114 mononucleotide 10 10 T panTro2.chrUn 136064 136073 mononucleotide 9 9 T +16 hg18.chr1 27291 27299 dinucleotide 8 4 CT panTro2.chrUn 136251 136259 dinucleotide 8 4 CT +16 hg18.chr1 30483 30495 trinucleotide 12 4 TTC panTro2.chrUn 139435 139447 trinucleotide 12 4 TTC +16 hg18.chr1 30503 30522 mononucleotide 19 19 T panTro2.chrUn 139457 139482 mononucleotide 25 25 T +16 hg18.chr1 26657 26667 dinucleotide 10 5 TG panTro2.chrUn 135618 135628 dinucleotide 10 5 TG +16 hg18.chr1 27104 27114 mononucleotide 10 10 T panTro2.chrUn 136064 136073 mononucleotide 9 9 T +16 hg18.chr1 27291 27299 dinucleotide 8 4 CT panTro2.chrUn 136251 136259 dinucleotide 8 4 CT +16 hg18.chr1 30483 30495 trinucleotide 12 4 TTC panTro2.chrUn 139435 139447 trinucleotide 12 4 TTC +17 hg18.chr1 33660 33676 mononucleotide 16 16 A panTro2.chrUn 9698149 9698162 mononucleotide 13 13 A +17 hg18.chr1 33660 33676 mononucleotide 16 16 A panTro2.chrUn 9698149 9698162 mononucleotide 13 13 A +19 hg18.chr1 35586 35595 dinucleotide 9 4 AT panTro2.chrUn 9700318 9700327 dinucleotide 9 4 AT +19 hg18.chr1 36427 36435 dinucleotide 8 4 GT panTro2.chrUn 9701160 9701168 dinucleotide 8 4 GT +19 hg18.chr1 37182 37192 mononucleotide 10 10 A panTro2.chrUn 9701917 9701928 mononucleotide 11 11 A +19 hg18.chr1 37620 37628 dinucleotide 8 4 TA panTro2.chrUn 9702357 9702365 dinucleotide 8 4 TA +19 hg18.chr1 41199 41207 dinucleotide 8 4 CT panTro2.chrUn 9705949 9705957 dinucleotide 8 4 CT +19 hg18.chr1 41728 41741 mononucleotide 13 13 A panTro2.chrUn 9706479 9706495 mononucleotide 16 16 A +19 hg18.chr1 35586 35595 dinucleotide 9 4 AT panTro2.chrUn 9700318 9700327 dinucleotide 9 4 AT +19 hg18.chr1 36427 36435 dinucleotide 8 4 GT panTro2.chrUn 9701160 9701168 dinucleotide 8 4 GT +19 hg18.chr1 37182 37192 mononucleotide 10 10 A panTro2.chrUn 9701917 9701928 mononucleotide 11 11 A +19 hg18.chr1 37620 37628 dinucleotide 8 4 TA panTro2.chrUn 9702357 9702365 dinucleotide 8 4 TA +19 hg18.chr1 41199 41207 dinucleotide 8 4 CT panTro2.chrUn 9705949 9705957 dinucleotide 8 4 CT +19 hg18.chr1 41728 41741 mononucleotide 13 13 A panTro2.chrUn 9706479 9706495 mononucleotide 16 16 A +21 hg18.chr1 47418 47426 dinucleotide 8 4 TA panTro2.chrUn 9713027 9713035 dinucleotide 8 4 TA +21 hg18.chr1 47950 47959 dinucleotide 9 4 TC panTro2.chrUn 9713559 9713568 dinucleotide 9 4 TC +21 hg18.chr1 47418 47426 dinucleotide 8 4 TA panTro2.chrUn 9713027 9713035 dinucleotide 8 4 TA +21 hg18.chr1 47950 47959 dinucleotide 9 4 TC panTro2.chrUn 9713559 9713568 dinucleotide 9 4 TC +25 hg18.chr1 56744 56752 dinucleotide 8 4 GA panTro2.chrUn 9723923 9723931 dinucleotide 8 4 GA +25 hg18.chr1 60215 60224 mononucleotide 9 9 A panTro2.chrUn 9727396 9727405 mononucleotide 9 9 A +25 hg18.chr1 56744 56752 dinucleotide 8 4 GA panTro2.chrUn 9723923 9723931 dinucleotide 8 4 GA +25 hg18.chr1 60215 60224 mononucleotide 9 9 A panTro2.chrUn 9727396 9727405 mononucleotide 9 9 A +25 hg18.chr1 61039 61050 mononucleotide 11 11 A panTro2.chrUn 9728220 9728230 mononucleotide 10 10 A +25 hg18.chr1 61710 61725 mononucleotide 15 15 T panTro2.chrUn 9728890 9728903 mononucleotide 13 13 T +26 hg18.chr1 67953 67961 dinucleotide 8 4 AT panTro2.chrUn 9735669 9735677 dinucleotide 8 4 AT +26 hg18.chr1 68606 68614 dinucleotide 8 4 AT panTro2.chrUn 9736324 9736332 dinucleotide 8 4 AT +26 hg18.chr1 67038 67059 mononucleotide 21 21 A panTro2.chrUn 9734760 9734777 mononucleotide 17 17 A +26 hg18.chr1 67953 67961 dinucleotide 8 4 AT panTro2.chrUn 9735669 9735677 dinucleotide 8 4 AT +26 hg18.chr1 68606 68614 dinucleotide 8 4 AT panTro2.chrUn 9736324 9736332 dinucleotide 8 4 AT +27 hg18.chr1 72077 72088 dinucleotide 11 5 AC panTro2.chrUn 9742946 9742957 dinucleotide 11 5 AC +32 hg18.chr1 81043 81052 dinucleotide 9 4 GA panTro2.chrUn 1797450 1797459 dinucleotide 9 4 GA +39 hg18.chr1 87721 87729 dinucleotide 8 4 AG panTro2.chr1_random 7074333 7074341 dinucleotide 8 4 AG +39 hg18.chr1 88697 88707 dinucleotide 10 5 TG panTro2.chr1_random 7075309 7075319 dinucleotide 10 5 TG +39 hg18.chr1 87721 87729 dinucleotide 8 4 AG panTro2.chr1_random 7074333 7074341 dinucleotide 8 4 AG +39 hg18.chr1 88697 88707 dinucleotide 10 5 TG panTro2.chr1_random 7075309 7075319 dinucleotide 10 5 TG +40 hg18.chr1 91199 91212 mononucleotide 13 13 A panTro2.chr1_random 7089889 7089900 mononucleotide 11 11 A +42 hg18.chr1 93838 93847 dinucleotide 9 4 CT panTro2.chr1_random 7090757 7090768 dinucleotide 11 5 CT +42 hg18.chr1 93838 93847 dinucleotide 9 4 CT panTro2.chr1_random 7090757 7090768 dinucleotide 11 5 CT +43 hg18.chr1 97391 97399 dinucleotide 8 4 AG panTro2.chr1 244578 244586 dinucleotide 8 4 AG +44 hg18.chr1 98409 98425 mononucleotide 16 16 A panTro2.chr1_random 7095323 7095342 mononucleotide 19 19 A +44 hg18.chr1 98409 98425 mononucleotide 16 16 A panTro2.chr1_random 7095323 7095342 mononucleotide 19 19 A +46 hg18.chr1 101851 101859 dinucleotide 8 4 CA panTro2.chr1_random 7109861 7109869 dinucleotide 8 4 CA +47 hg18.chr1 103743 103753 dinucleotide 10 5 CT panTro2.chr1 250633 250643 dinucleotide 10 5 CT +47 hg18.chr1 104174 104182 dinucleotide 8 4 GA panTro2.chr1 251064 251072 dinucleotide 8 4 GA +47 hg18.chr1 107676 107685 dinucleotide 9 4 AG panTro2.chr1 254594 254603 dinucleotide 9 4 AG +47 hg18.chr1 107735 107743 dinucleotide 8 4 AG panTro2.chr1 254653 254661 dinucleotide 8 4 AG +47 hg18.chr1 108222 108231 dinucleotide 9 4 AT panTro2.chr1 255140 255148 dinucleotide 8 4 AT +47 hg18.chr1 108253 108261 dinucleotide 8 4 AT panTro2.chr1 255171 255179 dinucleotide 8 4 AT +47 hg18.chr1 103743 103753 dinucleotide 10 5 CT panTro2.chr1 250633 250643 dinucleotide 10 5 CT +47 hg18.chr1 104174 104182 dinucleotide 8 4 GA panTro2.chr1 251064 251072 dinucleotide 8 4 GA +47 hg18.chr1 107676 107685 dinucleotide 9 4 AG panTro2.chr1 254594 254603 dinucleotide 9 4 AG +47 hg18.chr1 107735 107743 dinucleotide 8 4 AG panTro2.chr1 254653 254661 dinucleotide 8 4 AG +47 hg18.chr1 108222 108231 dinucleotide 9 4 AT panTro2.chr1 255140 255148 dinucleotide 8 4 AT +47 hg18.chr1 108253 108261 dinucleotide 8 4 AT panTro2.chr1 255171 255179 dinucleotide 8 4 AT +48 hg18.chr1 110072 110081 dinucleotide 9 4 TG panTro2.chr1 258778 258787 dinucleotide 9 4 TG +48 hg18.chr1 110072 110081 dinucleotide 9 4 TG panTro2.chr1 258778 258787 dinucleotide 9 4 TG +49 hg18.chr1 111133 111148 mononucleotide 15 15 T panTro2.chr1 260455 260473 mononucleotide 18 18 T +49 hg18.chr1 111503 111515 trinucleotide 12 4 TAA panTro2.chr1 260828 260846 trinucleotide 18 6 TAA +51 hg18.chr1 113280 113290 dinucleotide 10 5 AT panTro2.chr1_random 8247726 8247736 dinucleotide 10 5 AT +55 hg18.chr1 114709 114728 mononucleotide 19 19 A panTro2.chr1 262958 262973 mononucleotide 15 15 A +55 hg18.chr1 115520 115529 mononucleotide 9 9 A panTro2.chr1 263765 263775 mononucleotide 10 10 A +55 hg18.chr1 114709 114728 mononucleotide 19 19 A panTro2.chr1 262958 262973 mononucleotide 15 15 A +56 hg18.chr1 118460 118475 mononucleotide 15 15 T panTro2.chr1 267602 267617 mononucleotide 15 15 T +56 hg18.chr1 119541 119556 mononucleotide 15 15 T panTro2.chr1 268682 268695 mononucleotide 13 13 T +56 hg18.chr1 119775 119783 dinucleotide 8 4 GA panTro2.chr1 268914 268922 dinucleotide 8 4 GA +56 hg18.chr1 123929 123958 mononucleotide 29 29 T panTro2.chr1 273095 273130 mononucleotide 35 35 T +72 hg18.chr1 134751 134763 mononucleotide 12 12 A panTro2.chr1_random 7189181 7189197 mononucleotide 16 16 A +72 hg18.chr1 134994 135006 trinucleotide 12 4 GTG panTro2.chr1_random 7189427 7189439 trinucleotide 12 4 GTG +72 hg18.chr1 135805 135813 dinucleotide 8 4 GT panTro2.chr1_random 7190238 7190246 dinucleotide 8 4 GT +72 hg18.chr1 136433 136442 dinucleotide 9 4 TC panTro2.chr1_random 7190866 7190875 dinucleotide 9 4 TC +72 hg18.chr1 137771 137781 mononucleotide 10 10 A panTro2.chr1_random 7192213 7192224 mononucleotide 11 11 A +72 hg18.chr1 138639 138652 trinucleotide 13 4 AAT panTro2.chr1_random 7193082 7193095 trinucleotide 13 4 AAT +72 hg18.chr1 140196 140205 dinucleotide 9 4 AG panTro2.chr1_random 7194642 7194651 dinucleotide 9 4 AG +72 hg18.chr1 141348 141361 mononucleotide 13 13 T panTro2.chr1_random 7195790 7195814 mononucleotide 24 24 T +72 hg18.chr1 134994 135006 trinucleotide 12 4 GTG panTro2.chr1_random 7189427 7189439 trinucleotide 12 4 GTG +72 hg18.chr1 135805 135813 dinucleotide 8 4 GT panTro2.chr1_random 7190238 7190246 dinucleotide 8 4 GT +72 hg18.chr1 136433 136442 dinucleotide 9 4 TC panTro2.chr1_random 7190866 7190875 dinucleotide 9 4 TC +72 hg18.chr1 138639 138652 trinucleotide 13 4 AAT panTro2.chr1_random 7193082 7193095 trinucleotide 13 4 AAT +72 hg18.chr1 140196 140205 dinucleotide 9 4 AG panTro2.chr1_random 7194642 7194651 dinucleotide 9 4 AG +72 hg18.chr1 142689 142699 mononucleotide 10 10 T panTro2.chr1_random 7197149 7197158 mononucleotide 9 9 T +73 hg18.chr1 145718 145733 mononucleotide 15 15 A panTro2.chr1_random 7202121 7202135 mononucleotide 14 14 A +74 hg18.chr1 146143 146155 mononucleotide 12 12 T panTro2.chr1_random 7208622 7208632 mononucleotide 10 10 T +74 hg18.chr1 146971 146985 mononucleotide 14 14 A panTro2.chr1_random 7209449 7209463 mononucleotide 14 14 A +75 hg18.chr1 150335 150351 mononucleotide 16 16 T panTro2.chr1_random 7213029 7213047 mononucleotide 18 18 T +75 hg18.chr1 151431 151440 mononucleotide 9 9 A panTro2.chr1_random 7214127 7214137 mononucleotide 10 10 A +75 hg18.chr1 153993 154017 pentanucleotide 24 4 AAAAC panTro2.chr1_random 7216686 7216711 pentanucleotide 25 5 AAAAC +75 hg18.chr1 155151 155174 mononucleotide 23 23 A panTro2.chr1_random 7217843 7217867 mononucleotide 24 24 A +75 hg18.chr1 156454 156463 mononucleotide 9 9 A panTro2.chr1_random 7219148 7219157 mononucleotide 9 9 A +75 hg18.chr1 156998 157017 tetranucleotide 19 4 TTTA panTro2.chr1_random 7219691 7219710 tetranucleotide 19 4 TTTA +75 hg18.chr1 151431 151440 mononucleotide 9 9 A panTro2.chr1_random 7214127 7214137 mononucleotide 10 10 A +75 hg18.chr1 153993 154017 pentanucleotide 24 4 AAAAC panTro2.chr1_random 7216686 7216711 pentanucleotide 25 5 AAAAC +75 hg18.chr1 154537 154559 mononucleotide 22 22 A panTro2.chr1_random 7217231 7217251 mononucleotide 20 20 A +75 hg18.chr1 156454 156463 mononucleotide 9 9 A panTro2.chr1_random 7219148 7219157 mononucleotide 9 9 A +75 hg18.chr1 156998 157017 tetranucleotide 19 4 TTTA panTro2.chr1_random 7219691 7219710 tetranucleotide 19 4 TTTA +76 hg18.chr1 159723 159736 mononucleotide 13 13 T panTro2.chr1 224074251 224074269 mononucleotide 18 18 T +76 hg18.chr1 160798 160818 pentanucleotide 20 4 GTTTT panTro2.chr1 224075335 224075355 pentanucleotide 20 4 GTTTT +76 hg18.chr1 159723 159736 mononucleotide 13 13 T panTro2.chr1 224074251 224074269 mononucleotide 18 18 T +76 hg18.chr1 160798 160818 pentanucleotide 20 4 GTTTT panTro2.chr1 224075335 224075355 pentanucleotide 20 4 GTTTT +77 hg18.chr1 163076 163084 dinucleotide 8 4 AT panTro2.chr1_random 7293459 7293467 dinucleotide 8 4 AT +77 hg18.chr1 165179 165187 dinucleotide 8 4 GC panTro2.chr1_random 7295617 7295625 dinucleotide 8 4 GC +77 hg18.chr1 165310 165322 mononucleotide 12 12 A panTro2.chr1_random 7295748 7295770 mononucleotide 22 22 A +77 hg18.chr1 163076 163084 dinucleotide 8 4 AT panTro2.chr1_random 7293459 7293467 dinucleotide 8 4 AT +77 hg18.chr1 165179 165187 dinucleotide 8 4 GC panTro2.chr1_random 7295617 7295625 dinucleotide 8 4 GC +77 hg18.chr1 165310 165322 mononucleotide 12 12 A panTro2.chr1_random 7295748 7295770 mononucleotide 22 22 A +83 hg18.chr1 219668 219689 tetranucleotide 21 5 TAAA panTro2.chr3 77587413 77587435 tetranucleotide 22 5 TAAA +83 hg18.chr1 219668 219689 tetranucleotide 21 5 TAAA panTro2.chr3 77587413 77587435 tetranucleotide 22 5 TAAA +87 hg18.chr1 222298 222309 mononucleotide 11 11 T panTro2.chrUn 1781936 1781946 mononucleotide 10 10 T +87 hg18.chr1 222298 222309 mononucleotide 11 11 T panTro2.chrUn 1781936 1781946 mononucleotide 10 10 T +89 hg18.chr1 224906 224915 mononucleotide 9 9 T panTro2.chrUn 1780175 1780184 mononucleotide 9 9 T +89 hg18.chr1 224906 224915 mononucleotide 9 9 T panTro2.chrUn 1780175 1780184 mononucleotide 9 9 T +93 hg18.chr1 227371 227380 dinucleotide 9 4 GA panTro2.chr1_random 7325572 7325581 dinucleotide 9 4 GA +93 hg18.chr1 227392 227408 mononucleotide 16 16 A panTro2.chr1_random 7325593 7325616 mononucleotide 23 23 A +93 hg18.chr1 227371 227380 dinucleotide 9 4 GA panTro2.chr1_random 7325572 7325581 dinucleotide 9 4 GA +96 hg18.chr1 234056 234064 dinucleotide 8 4 AG panTro2.chr1_random 8589985 8589993 dinucleotide 8 4 AG +97 hg18.chr1 235032 235042 dinucleotide 10 5 TG panTro2.chr1_random 7331012 7331022 dinucleotide 10 5 TG +97 hg18.chr1 237516 237529 mononucleotide 13 13 A panTro2.chr1_random 7333512 7333527 mononucleotide 15 15 A +99 hg18.chr1 240155 240164 dinucleotide 9 4 CT panTro2.chr1_random 7334380 7334389 dinucleotide 9 4 CT +99 hg18.chr1 243706 243714 dinucleotide 8 4 AG panTro2.chr1_random 7337953 7337961 dinucleotide 8 4 AG +99 hg18.chr1 244724 244746 mononucleotide 22 22 A panTro2.chr1_random 7338970 7338987 mononucleotide 17 17 A +99 hg18.chr1 240155 240164 dinucleotide 9 4 CT panTro2.chr1_random 7334380 7334389 dinucleotide 9 4 CT +99 hg18.chr1 243706 243714 dinucleotide 8 4 AG panTro2.chr1_random 7337953 7337961 dinucleotide 8 4 AG +99 hg18.chr1 244724 244746 mononucleotide 22 22 A panTro2.chr1_random 7338970 7338987 mononucleotide 17 17 A +100 hg18.chr1 248168 248176 dinucleotide 8 4 CA panTro2.chr1_random 7109861 7109869 dinucleotide 8 4 CA +100 hg18.chr1 248168 248176 dinucleotide 8 4 CA panTro2.chr1_random 7109861 7109869 dinucleotide 8 4 CA