Mercurial > repos > devteam > ncbi_blast_plus

annotate test-data/blastn_rhodopsin_vs_three_human.xml @ 27:6f8ea4b9a2c4 draft

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"planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 3f9f39ad808325a11d9967980d2cb82c96d69324"
author peterjc
date Wed, 09 Sep 2020 15:32:17 +0000
parents 31e517610e1f
children 87a7ee4cb36f
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastn</BlastOutput_program>
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31e517610e1f v0.3.0 Updated for NCBI BLAST+ 2.7.1
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5 <BlastOutput_version>BLASTN 2.7.1+</BlastOutput_version>
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6 <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), &quot;A greedy algorithm for aligning DNA sequences&quot;, J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
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9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def>
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10 <BlastOutput_query-len>1047</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_expect>1e-40</Parameters_expect>
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14 <Parameters_sc-match>1</Parameters_sc-match>
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15 <Parameters_sc-mismatch>-2</Parameters_sc-mismatch>
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16 <Parameters_gap-open>0</Parameters_gap-open>
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17 <Parameters_gap-extend>0</Parameters_gap-extend>
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18 <Parameters_filter>L;m;</Parameters_filter>
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19 </Parameters>
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20 </BlastOutput_param>
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21 <BlastOutput_iterations>
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22 <Iteration>
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23 <Iteration_iter-num>1</Iteration_iter-num>
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24 <Iteration_query-ID>Query_1</Iteration_query-ID>
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25 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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26 <Iteration_query-len>1047</Iteration_query-len>
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27 <Iteration_hits>
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28 <Hit>
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29 <Hit_num>1</Hit_num>
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30 <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
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31 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
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32 <Hit_accession>Subject_3</Hit_accession>
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33 <Hit_len>1213</Hit_len>
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34 <Hit_hsps>
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35 <Hsp>
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36 <Hsp_num>1</Hsp_num>
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37 <Hsp_bit-score>1474.75</Hsp_bit-score>
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38 <Hsp_score>798</Hsp_score>
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39 <Hsp_evalue>0</Hsp_evalue>
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40 <Hsp_query-from>1</Hsp_query-from>
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41 <Hsp_query-to>1047</Hsp_query-to>
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42 <Hsp_hit-from>88</Hsp_hit-from>
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43 <Hsp_hit-to>1134</Hsp_hit-to>
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44 <Hsp_query-frame>1</Hsp_query-frame>
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45 <Hsp_hit-frame>1</Hsp_hit-frame>
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46 <Hsp_identity>964</Hsp_identity>
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47 <Hsp_positive>964</Hsp_positive>
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48 <Hsp_gaps>0</Hsp_gaps>
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49 <Hsp_align-len>1047</Hsp_align-len>
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50 <Hsp_qseq>ATGAACGGGACGGAGGGCCCGAACTTCTACGTGCCCTTCTCCAACAAAACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTCCTGCTCATCGTGCTTGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACGGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCTGACCTCTTCATGGTCTTCGGTGGCTTCACCACCACCCTCTACACCTCTCTGCATGGATACTTTGTCTTTGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACACTGGGCGGTGAAATTGCCCTGTGGTCTTTGGTGGTCCTGGCCATTGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCATGCCATAATGGGCGTCGCTTTCACCTGGGTCATGGCACTGGCCTGCGCTGCACCCCCCCTCGTTGGTTGGTCCAGGTACATCCCTGAAGGCATGCAGTGTTCATGCGGGATCGACTACTACACACTCAAGCCAGAAGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATCGTCATCTTCTTTTGCTACGGGCAGCTTGTCTTCACAGTCAAGGAGGCGGCAGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCTGAGAAGGAGGTCACTCGCATGGTCATCATCATGGTCATTGCTTTCCTGATCTGTTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGGTCCAACTTTGGCCCCATCTTCATGACACTCCCGGCGTTCTTCGCAAAGTCCTCCTCCATCTACAACCCTGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACTACCCTCTGCTGTGGCAAGAACCCACTGGGTGATGACGAGGCTTCCACAACCGGTTCCAAGACGGAGACCAGCCAGGTGGCACCGGCCTAA</Hsp_qseq>
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51 <Hsp_hseq>ATGAATGGCACAGAAGGCCCTAACTTCTACGTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGATGAGGCCTCTGCTACCGTGTCCAAGACGGAGACGAGCCAGGTGGCCCCGGCCTAA</Hsp_hseq>
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52 <Hsp_midline>||||| || || || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||| |||| || ||||||||||||||||| || ||| ||||||| || || || |||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| |||||||| || ||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| || ||||| || | |||| |||||||||||||| ||||||||||| |||||||||</Hsp_midline>
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53 </Hsp>
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54 </Hit_hsps>
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55 </Hit>
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56 </Iteration_hits>
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57 <Iteration_stat>
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58 <Statistics>
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59 <Statistics_db-num>0</Statistics_db-num>
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60 <Statistics_db-len>0</Statistics_db-len>
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61 <Statistics_hsp-len>16</Statistics_hsp-len>
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62 <Statistics_eff-space>11015204</Statistics_eff-space>
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63 <Statistics_kappa>0.46</Statistics_kappa>
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64 <Statistics_lambda>1.28</Statistics_lambda>
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65 <Statistics_entropy>0.85</Statistics_entropy>
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66 </Statistics>
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67 </Iteration_stat>
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68 </Iteration>
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69 <Iteration>
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70 <Iteration_iter-num>2</Iteration_iter-num>
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71 <Iteration_query-ID>Query_2</Iteration_query-ID>
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72 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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73 <Iteration_query-len>1574</Iteration_query-len>
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74 <Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
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75 </Iteration_hits>
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76 <Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
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77 <Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
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78 <Statistics_db-num>0</Statistics_db-num>
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79 <Statistics_db-len>0</Statistics_db-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
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80 <Statistics_hsp-len>16</Statistics_hsp-len>
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81 <Statistics_eff-space>16645672</Statistics_eff-space>
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623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
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82 <Statistics_kappa>0.46</Statistics_kappa>
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83 <Statistics_lambda>1.28</Statistics_lambda>
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84 <Statistics_entropy>0.85</Statistics_entropy>
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85 </Statistics>
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86 </Iteration_stat>
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87 <Iteration_message>No hits found</Iteration_message>
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88 </Iteration>
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89 <Iteration>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
90 <Iteration_iter-num>3</Iteration_iter-num>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
91 <Iteration_query-ID>Query_3</Iteration_query-ID>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
92 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
93 <Iteration_query-len>4301</Iteration_query-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
94 <Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
95 <Hit>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
96 <Hit_num>1</Hit_num>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
97 <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
98 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
99 <Hit_accession>Subject_3</Hit_accession>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
100 <Hit_len>1213</Hit_len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
101 <Hit_hsps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
102 <Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
103 <Hsp_num>1</Hsp_num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
104 <Hsp_bit-score>460.936</Hsp_bit-score>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
105 <Hsp_score>249</Hsp_score>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
106 <Hsp_evalue>8.03308e-132</Hsp_evalue>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
107 <Hsp_query-from>1</Hsp_query-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
108 <Hsp_query-to>333</Hsp_query-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
109 <Hsp_hit-from>118</Hsp_hit-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
110 <Hsp_hit-to>450</Hsp_hit-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
111 <Hsp_query-frame>1</Hsp_query-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
112 <Hsp_hit-frame>1</Hsp_hit-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
113 <Hsp_identity>305</Hsp_identity>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
114 <Hsp_positive>305</Hsp_positive>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
115 <Hsp_gaps>0</Hsp_gaps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
116 <Hsp_align-len>333</Hsp_align-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
117 <Hsp_qseq>GTGCCCTTCTCCAACAAGACAGGCGTGGTGCGCAGTCCCTTCGAGCATCCACAGTACTACCTGGCCGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTCGGCTTCCCCATCAACTTCCTCACGCTCTATGTCACGGTTCAGCACAAGAAGCTGCGTACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCCGACCTCTTCATGGTCTTCGGAGGCTTCACCACCACCCTCTACACCTCCCTGCATGGATACTTTGTCTTCGGGCCTACGGGATGCAATCTGGAGGGCTTTTTTGCCACCCTGGGAGGT</Hsp_qseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
118 <Hsp_hseq>GTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGT</Hsp_hseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
119 <Hsp_midline>|||||||||||||| ||| || ||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | || |||||||||| ||||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |||||||||| |||||||||||||| |||</Hsp_midline>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
120 </Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
121 <Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
122 <Hsp_num>2</Hsp_num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
123 <Hsp_bit-score>331.671</Hsp_bit-score>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
124 <Hsp_score>179</Hsp_score>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
125 <Hsp_evalue>6.57155e-93</Hsp_evalue>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
126 <Hsp_query-from>3127</Hsp_query-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
127 <Hsp_query-to>3368</Hsp_query-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
128 <Hsp_hit-from>782</Hsp_hit-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
129 <Hsp_hit-to>1023</Hsp_hit-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
130 <Hsp_query-frame>1</Hsp_query-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
131 <Hsp_hit-frame>1</Hsp_hit-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
132 <Hsp_identity>222</Hsp_identity>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
133 <Hsp_positive>222</Hsp_positive>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
134 <Hsp_gaps>2</Hsp_gaps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
135 <Hsp_align-len>243</Hsp_align-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
136 <Hsp_qseq>AGGCAGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAGGTCACCCGTATGGTCATCATCATGGTCATTGCTTTCCTAATCTGTTGGCTGCCGTATGCCGGCGTGGCATTCTACATCTTCACCCACCAGGGCTCTAACTTTGGCCCCATCTTCATGACCCTCCCGGCATTCTTTGCCAAG-TCGTCCTCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAG</Hsp_qseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
137 <Hsp_hseq>AGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCG-CCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAG</Hsp_hseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
138 <Hsp_midline>|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| |||| || ||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |||| || |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
139 </Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
140 <Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
141 <Hsp_num>3</Hsp_num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
142 <Hsp_bit-score>265.191</Hsp_bit-score>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
143 <Hsp_score>143</Hsp_score>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
144 <Hsp_evalue>6.76016e-73</Hsp_evalue>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
145 <Hsp_query-from>1410</Hsp_query-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
146 <Hsp_query-to>1582</Hsp_query-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
147 <Hsp_hit-from>448</Hsp_hit-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
148 <Hsp_hit-to>620</Hsp_hit-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
149 <Hsp_query-frame>1</Hsp_query-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
150 <Hsp_hit-frame>1</Hsp_hit-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
151 <Hsp_identity>163</Hsp_identity>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
152 <Hsp_positive>163</Hsp_positive>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
153 <Hsp_gaps>0</Hsp_gaps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
154 <Hsp_align-len>173</Hsp_align-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
155 <Hsp_qseq>GGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTATGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCCTTGCCCTCACCTGGGTCATGGCACTGGCCTGCGCCGCGCCCCCGCTAGTCGGCTGGTCCAGGTA</Hsp_qseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
156 <Hsp_hseq>GGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTA</Hsp_hseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
157 <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||| || | |||||||||||||||</Hsp_midline>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
158 </Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
159 <Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
160 <Hsp_num>4</Hsp_num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
161 <Hsp_bit-score>248.571</Hsp_bit-score>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
162 <Hsp_score>134</Hsp_score>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
163 <Hsp_evalue>6.80816e-68</Hsp_evalue>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
164 <Hsp_query-from>2854</Hsp_query-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
165 <Hsp_query-to>3023</Hsp_query-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
166 <Hsp_hit-from>615</Hsp_hit-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
167 <Hsp_hit-to>784</Hsp_hit-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
168 <Hsp_query-frame>1</Hsp_query-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
169 <Hsp_hit-frame>1</Hsp_hit-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
170 <Hsp_identity>158</Hsp_identity>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
171 <Hsp_positive>158</Hsp_positive>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
172 <Hsp_gaps>0</Hsp_gaps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
173 <Hsp_align-len>170</Hsp_align-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
174 <Hsp_qseq>CAGGTACATCCCAGAGGGCATGCAGTGCTCATGTGGAATCGACTACTACACCCTCAAGCCGGAGGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCTATGATTGTCATATTCTTTTGCTATGGACAGCTGGTCTTCACCGTCAAGGAGG</Hsp_qseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
175 <Hsp_hseq>CAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGG</Hsp_hseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
176 <Hsp_midline>|||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| || || |||||||| ||||| |||||||||||||||||||</Hsp_midline>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
177 </Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
178 </Hit_hsps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
179 </Hit>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
180 </Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
181 <Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
182 <Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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183 <Statistics_db-num>0</Statistics_db-num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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184 <Statistics_db-len>0</Statistics_db-len>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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185 <Statistics_hsp-len>17</Statistics_hsp-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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186 <Statistics_eff-space>45757404</Statistics_eff-space>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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187 <Statistics_kappa>0.46</Statistics_kappa>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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188 <Statistics_lambda>1.28</Statistics_lambda>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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189 <Statistics_entropy>0.85</Statistics_entropy>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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190 </Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
191 </Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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192 </Iteration>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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193 <Iteration>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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194 <Iteration_iter-num>4</Iteration_iter-num>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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195 <Iteration_query-ID>Query_4</Iteration_query-ID>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
196 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
197 <Iteration_query-len>983</Iteration_query-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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198 <Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
199 <Hit>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
200 <Hit_num>1</Hit_num>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
201 <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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202 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
203 <Hit_accession>Subject_3</Hit_accession>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
204 <Hit_len>1213</Hit_len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
205 <Hit_hsps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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206 <Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
207 <Hsp_num>1</Hsp_num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
208 <Hsp_bit-score>1323.32</Hsp_bit-score>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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209 <Hsp_score>716</Hsp_score>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
210 <Hsp_evalue>0</Hsp_evalue>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
211 <Hsp_query-from>1</Hsp_query-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
212 <Hsp_query-to>959</Hsp_query-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
213 <Hsp_hit-from>118</Hsp_hit-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
214 <Hsp_hit-to>1076</Hsp_hit-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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215 <Hsp_query-frame>1</Hsp_query-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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216 <Hsp_hit-frame>1</Hsp_hit-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
217 <Hsp_identity>878</Hsp_identity>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
218 <Hsp_positive>878</Hsp_positive>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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219 <Hsp_gaps>0</Hsp_gaps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
220 <Hsp_align-len>959</Hsp_align-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
221 <Hsp_qseq>GTGCCCTTCTCCAACAAGACGGGTGTGGTGCGCAGCCCCTTCGAGTACCCGCAGTACTACCTGGCTGAGCCCTGGCAGTTCTCCATGCTGGCTGCCTACATGTTTCTGCTGATCGTGCTCGGATTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCTGTGGCCAACCTCTTCATGGTCTTTGGAGGCTTCACCACCACCCTGTATACCTCTATGCATGGATACTTCGTCTTCGGGGCCACGGGATGCAATCTGGAGGGCTTCTTTGCCACGCTGGGCGGTGAAATCGCCCTGTGGTCCCTGGTGGTCCTGGCCATCGAGCGGTATGTGGTGGTCTGCAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCACGCCATCATGGGCCTCGCCTTCACGTGGGTCATGGCACTGGCCTGCGCTGCACCCCCACTAGCCGGCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGCTCGTGTGGGATTGACTACTACACGCTCAAACCGGAGGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTGTCATTTTCTTCTGCTACGGACAGCTGGTGTTCACAGTGAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAAGTCACGCGCATGGTCATCATCATGGTCGTTGCGTTCCTAATCTGTTGGCTGCCCTACGCCAGCGTGGCATTCTACATCTTTACCCACCAGGGCTCTAACTTTGGCCCTGTCTTCATGACCATCCCGGCATTCTTCGCCAAGTCATCCTCCATCTACAACCCGGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCCTCTGCTGTGGCAAGAACCCACTGGGTGA</Hsp_qseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
222 <Hsp_hseq>GTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGA</Hsp_hseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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223 <Hsp_midline>|||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| | || |||||||||| |||||| || |||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| || ||||| || ||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||| | || ||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||||||| || ||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||</Hsp_midline>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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224 </Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
225 </Hit_hsps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
226 </Hit>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
227 </Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
228 <Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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229 <Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
230 <Statistics_db-num>0</Statistics_db-num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
231 <Statistics_db-len>0</Statistics_db-len>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
232 <Statistics_hsp-len>16</Statistics_hsp-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
233 <Statistics_eff-space>10331428</Statistics_eff-space>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
234 <Statistics_kappa>0.46</Statistics_kappa>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
235 <Statistics_lambda>1.28</Statistics_lambda>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
236 <Statistics_entropy>0.85</Statistics_entropy>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
237 </Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
238 </Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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239 </Iteration>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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240 <Iteration>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
241 <Iteration_iter-num>5</Iteration_iter-num>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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242 <Iteration_query-ID>Query_5</Iteration_query-ID>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
243 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
244 <Iteration_query-len>1047</Iteration_query-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
245 <Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
246 <Hit>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
247 <Hit_num>1</Hit_num>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
248 <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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249 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
250 <Hit_accession>Subject_3</Hit_accession>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
251 <Hit_len>1213</Hit_len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
252 <Hit_hsps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
253 <Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
254 <Hsp_num>1</Hsp_num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
255 <Hsp_bit-score>1208.83</Hsp_bit-score>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
256 <Hsp_score>654</Hsp_score>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
257 <Hsp_evalue>0</Hsp_evalue>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
258 <Hsp_query-from>1</Hsp_query-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
259 <Hsp_query-to>1047</Hsp_query-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
260 <Hsp_hit-from>88</Hsp_hit-from>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
261 <Hsp_hit-to>1134</Hsp_hit-to>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
262 <Hsp_query-frame>1</Hsp_query-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
263 <Hsp_hit-frame>1</Hsp_hit-frame>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
264 <Hsp_identity>917</Hsp_identity>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
265 <Hsp_positive>917</Hsp_positive>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
266 <Hsp_gaps>2</Hsp_gaps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
267 <Hsp_align-len>1048</Hsp_align-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
268 <Hsp_qseq>ATGAACGGGACCGAGGGCCCAAACTTCTACGTGCCTTTCTCCAACAAGACGGGCGTCGTACGCAGCCCCTTCGAGGCGCCGCAGTACTACCTGGCTGAGCCATGGCAGTTCAGCATGCTGGCCGCCTACATGTTCCTGCTGATCATGCTTGGCTTCCCCATCAACTTCCTCACGCTGTACGTCACAGTCCAGCACAAGAAGCTGAGGACCCCCCTCAACTACATCCTGCTCAACCTGGCCGTGGCAGATCTCTTCATGGTGTTCGGGGGCTTCACCACCACCCTGTATACCTCTCTGCACGGGTACTTCGTGTTCGGTCCGACGGGCTGCAACCTCGAGGGCTTCTTTGCCACCTTAGGCGGTGAAATTGCACTGTGGTCCTTGGTGGTGCTAGCCATCGAGCGGTACGTAGTGGTGTGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCGTCGCATTCACCTGGGTCATGGCTCTGGCCTGTGCGGCCCCCCCCCTCGTCGGCTGGTCTAGATACATCCCGGAGGGGATGCAGTGCTCGTGCGGGATCGATTACTACACGCCCCACGAGGAGACCAACAATGAGTCGTTCGTCATCTACATGTTCGTTGTACACTTCATCATCCCCCTGATTGTCATATTCTTCTGCTACGGGCAGCTGGTCTTCACCGTCAAGGAGGCTGCAGCCCAGCAGCAGGAGTCGGCCACCACTCAGAAGGCCGAGAAGGAGGTCACGCGTATGGTCATCATCATGGTCATCGCTTTCCTCATATGCTGGCTGCCCTACGCAGGTGTGGCGTTCTACATCTTCACCCATCAGGGATCCGACTTTGGCCCCATCTTCATGACCATCCCGGCTTTCTTTGCCAAGA-CGTCTGCCGTCTATAACCCCGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGGTCACCACTCTCTGCTGTGGCAAGAACCCCCTAGGTGACGACGAGGCCTCCACGACCGTGTCCAAGACAGAGACCAGCCAAGTGGCCCCTGCCTAA</Hsp_qseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
diff changeset
269 <Hsp_hseq>ATGAATGGCACAGAAGGCCCTAACTTCTACGTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCC-GCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGATGAGGCCTCTGCTACCGTGTCCAAGACGGAGACGAGCCAGGTGGCCCCGGCCTAA</Hsp_hseq>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
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270 <Hsp_midline>||||| || || || ||||| |||||||||||||| |||||||| |||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || || ||||||||||||||||||||||| |||||||| || ||||||||||| | || |||||||||| |||||| || ||||||||||| || |||||||| ||||| || || || ||||| | |||||||||||||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| || || ||||| |||| ||||||||| || |||||||| ||||| ||||||||||||| || ||||| |||||||||| | | |||| |||||| ||||| || ||||||||||||||||| || ||||||| ||||||| ||||| |||| || |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || |||||| |||||||||| | ||||| ||||||||||||||||| ||||| ||| |||| || |||||||||||||||||||| || ||||||||||||| || | ||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| || |||||||| |||||||| | |||||||||||||| ||||| ||||| |||||||| ||||||</Hsp_midline>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
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271 </Hsp>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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272 </Hit_hsps>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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273 </Hit>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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274 </Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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275 <Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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276 <Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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277 <Statistics_db-num>0</Statistics_db-num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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278 <Statistics_db-len>0</Statistics_db-len>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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279 <Statistics_hsp-len>16</Statistics_hsp-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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280 <Statistics_eff-space>11015204</Statistics_eff-space>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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281 <Statistics_kappa>0.46</Statistics_kappa>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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282 <Statistics_lambda>1.28</Statistics_lambda>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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283 <Statistics_entropy>0.85</Statistics_entropy>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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284 </Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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285 </Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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286 </Iteration>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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287 <Iteration>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
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288 <Iteration_iter-num>6</Iteration_iter-num>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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289 <Iteration_query-ID>Query_6</Iteration_query-ID>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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290 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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291 <Iteration_query-len>1344</Iteration_query-len>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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292 <Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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293 </Iteration_hits>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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294 <Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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295 <Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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296 <Statistics_db-num>0</Statistics_db-num>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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297 <Statistics_db-len>0</Statistics_db-len>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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298 <Statistics_hsp-len>16</Statistics_hsp-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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299 <Statistics_eff-space>14188352</Statistics_eff-space>
13
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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300 <Statistics_kappa>0.46</Statistics_kappa>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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301 <Statistics_lambda>1.28</Statistics_lambda>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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302 <Statistics_entropy>0.85</Statistics_entropy>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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303 </Statistics>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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304 </Iteration_stat>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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305 <Iteration_message>No hits found</Iteration_message>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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306 </Iteration>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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307 </BlastOutput_iterations>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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308 </BlastOutput>
623f727cdff1 Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
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309