annotate test-data/blastx_rhodopsin_vs_four_human.xml @ 4:9d5beacae92b draft

Uploaded v0.0.13 which uses the recently added error handling. No longer bundles the hide_stderr.py script which is now redundant.
author peterjc
date Wed, 19 Sep 2012 13:08:31 -0400
parents d375502056f1
children 1f546099212f
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastx</BlastOutput_program>
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5 <BlastOutput_version>BLASTX 2.2.25+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
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9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def>
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10 <BlastOutput_query-len>1047</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
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14 <Parameters_expect>1e-10</Parameters_expect>
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15 <Parameters_gap-open>11</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>L;</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>Query_1</Iteration_query-ID>
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24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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25 <Iteration_query-len>1047</Iteration_query-len>
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26 <Iteration_hits></Iteration_hits>
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27 <Iteration_stat>
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28 <Statistics>
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29 <Statistics_db-num>0</Statistics_db-num>
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30 <Statistics_db-len>0</Statistics_db-len>
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31 <Statistics_hsp-len>29</Statistics_hsp-len>
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32 <Statistics_eff-space>102080</Statistics_eff-space>
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33 <Statistics_kappa>0.041</Statistics_kappa>
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34 <Statistics_lambda>0.267</Statistics_lambda>
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35 <Statistics_entropy>0.14</Statistics_entropy>
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36 </Statistics>
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37 </Iteration_stat>
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38 <Iteration_message>No hits found</Iteration_message>
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39 </Iteration>
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40 <Iteration>
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41 <Iteration_iter-num>2</Iteration_iter-num>
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42 <Iteration_query-ID>Query_1</Iteration_query-ID>
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43 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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44 <Iteration_query-len>1047</Iteration_query-len>
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45 <Iteration_hits></Iteration_hits>
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46 <Iteration_stat>
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47 <Statistics>
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48 <Statistics_db-num>0</Statistics_db-num>
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49 <Statistics_db-len>0</Statistics_db-len>
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50 <Statistics_hsp-len>29</Statistics_hsp-len>
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51 <Statistics_eff-space>102080</Statistics_eff-space>
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52 <Statistics_kappa>0.041</Statistics_kappa>
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53 <Statistics_lambda>0.267</Statistics_lambda>
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54 <Statistics_entropy>0.14</Statistics_entropy>
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55 </Statistics>
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56 </Iteration_stat>
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57 <Iteration_message>No hits found</Iteration_message>
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58 </Iteration>
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59 <Iteration>
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60 <Iteration_iter-num>3</Iteration_iter-num>
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61 <Iteration_query-ID>Query_1</Iteration_query-ID>
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62 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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63 <Iteration_query-len>1047</Iteration_query-len>
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64 <Iteration_hits></Iteration_hits>
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65 <Iteration_stat>
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66 <Statistics>
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67 <Statistics_db-num>0</Statistics_db-num>
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68 <Statistics_db-len>0</Statistics_db-len>
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69 <Statistics_hsp-len>29</Statistics_hsp-len>
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70 <Statistics_eff-space>102080</Statistics_eff-space>
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71 <Statistics_kappa>0.041</Statistics_kappa>
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72 <Statistics_lambda>0.267</Statistics_lambda>
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73 <Statistics_entropy>0.14</Statistics_entropy>
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74 </Statistics>
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75 </Iteration_stat>
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76 <Iteration_message>No hits found</Iteration_message>
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77 </Iteration>
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78 <Iteration>
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79 <Iteration_iter-num>4</Iteration_iter-num>
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80 <Iteration_query-ID>Query_1</Iteration_query-ID>
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81 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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82 <Iteration_query-len>1047</Iteration_query-len>
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83 <Iteration_hits>
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84 <Hit>
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85 <Hit_num>1</Hit_num>
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86 <Hit_id>Subject_4</Hit_id>
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87 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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88 <Hit_accession>Subject_4</Hit_accession>
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89 <Hit_len>348</Hit_len>
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90 <Hit_hsps>
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91 <Hsp>
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92 <Hsp_num>1</Hsp_num>
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93 <Hsp_bit-score>662.143908370966</Hsp_bit-score>
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94 <Hsp_score>1707</Hsp_score>
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95 <Hsp_evalue>0</Hsp_evalue>
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96 <Hsp_query-from>1</Hsp_query-from>
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97 <Hsp_query-to>1044</Hsp_query-to>
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98 <Hsp_hit-from>1</Hsp_hit-from>
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99 <Hsp_hit-to>348</Hsp_hit-to>
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100 <Hsp_query-frame>1</Hsp_query-frame>
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101 <Hsp_hit-frame>0</Hsp_hit-frame>
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102 <Hsp_identity>336</Hsp_identity>
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103 <Hsp_positive>343</Hsp_positive>
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104 <Hsp_gaps>0</Hsp_gaps>
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105 <Hsp_align-len>348</Hsp_align-len>
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106 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq>
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107 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq>
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108 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
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109 </Hsp>
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110 </Hit_hsps>
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111 </Hit>
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112 </Iteration_hits>
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113 <Iteration_stat>
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114 <Statistics>
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115 <Statistics_db-num>0</Statistics_db-num>
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116 <Statistics_db-len>0</Statistics_db-len>
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117 <Statistics_hsp-len>29</Statistics_hsp-len>
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118 <Statistics_eff-space>102080</Statistics_eff-space>
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119 <Statistics_kappa>0.041</Statistics_kappa>
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120 <Statistics_lambda>0.267</Statistics_lambda>
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121 <Statistics_entropy>0.14</Statistics_entropy>
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122 </Statistics>
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123 </Iteration_stat>
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124 </Iteration>
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125 <Iteration>
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126 <Iteration_iter-num>5</Iteration_iter-num>
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127 <Iteration_query-ID>Query_2</Iteration_query-ID>
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128 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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129 <Iteration_query-len>1574</Iteration_query-len>
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130 <Iteration_hits></Iteration_hits>
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131 <Iteration_stat>
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132 <Statistics>
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133 <Statistics_db-num>0</Statistics_db-num>
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134 <Statistics_db-len>0</Statistics_db-len>
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135 <Statistics_hsp-len>32</Statistics_hsp-len>
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136 <Statistics_eff-space>155472</Statistics_eff-space>
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137 <Statistics_kappa>0.041</Statistics_kappa>
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138 <Statistics_lambda>0.267</Statistics_lambda>
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139 <Statistics_entropy>0.14</Statistics_entropy>
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140 </Statistics>
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141 </Iteration_stat>
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142 <Iteration_message>No hits found</Iteration_message>
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143 </Iteration>
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144 <Iteration>
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145 <Iteration_iter-num>6</Iteration_iter-num>
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146 <Iteration_query-ID>Query_2</Iteration_query-ID>
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147 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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148 <Iteration_query-len>1574</Iteration_query-len>
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149 <Iteration_hits></Iteration_hits>
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150 <Iteration_stat>
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151 <Statistics>
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152 <Statistics_db-num>0</Statistics_db-num>
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153 <Statistics_db-len>0</Statistics_db-len>
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154 <Statistics_hsp-len>32</Statistics_hsp-len>
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155 <Statistics_eff-space>155472</Statistics_eff-space>
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156 <Statistics_kappa>0.041</Statistics_kappa>
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157 <Statistics_lambda>0.267</Statistics_lambda>
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158 <Statistics_entropy>0.14</Statistics_entropy>
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159 </Statistics>
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160 </Iteration_stat>
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161 <Iteration_message>No hits found</Iteration_message>
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162 </Iteration>
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163 <Iteration>
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164 <Iteration_iter-num>7</Iteration_iter-num>
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165 <Iteration_query-ID>Query_2</Iteration_query-ID>
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166 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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167 <Iteration_query-len>1574</Iteration_query-len>
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168 <Iteration_hits></Iteration_hits>
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169 <Iteration_stat>
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170 <Statistics>
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171 <Statistics_db-num>0</Statistics_db-num>
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172 <Statistics_db-len>0</Statistics_db-len>
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173 <Statistics_hsp-len>32</Statistics_hsp-len>
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174 <Statistics_eff-space>155472</Statistics_eff-space>
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175 <Statistics_kappa>0.041</Statistics_kappa>
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176 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
177 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
178 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
179 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
180 <Iteration_message>No hits found</Iteration_message>
d375502056f1 Uploaded
devteam
parents:
diff changeset
181 </Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
182 <Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
183 <Iteration_iter-num>8</Iteration_iter-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
184 <Iteration_query-ID>Query_2</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
185 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
186 <Iteration_query-len>1574</Iteration_query-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
187 <Iteration_hits>
d375502056f1 Uploaded
devteam
parents:
diff changeset
188 <Hit>
d375502056f1 Uploaded
devteam
parents:
diff changeset
189 <Hit_num>1</Hit_num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
190 <Hit_id>Subject_4</Hit_id>
d375502056f1 Uploaded
devteam
parents:
diff changeset
191 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
192 <Hit_accession>Subject_4</Hit_accession>
d375502056f1 Uploaded
devteam
parents:
diff changeset
193 <Hit_len>348</Hit_len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
194 <Hit_hsps>
d375502056f1 Uploaded
devteam
parents:
diff changeset
195 <Hsp>
d375502056f1 Uploaded
devteam
parents:
diff changeset
196 <Hsp_num>1</Hsp_num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
197 <Hsp_bit-score>575.088804213644</Hsp_bit-score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
198 <Hsp_score>1481</Hsp_score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
199 <Hsp_evalue>1.31349806431671e-168</Hsp_evalue>
d375502056f1 Uploaded
devteam
parents:
diff changeset
200 <Hsp_query-from>42</Hsp_query-from>
d375502056f1 Uploaded
devteam
parents:
diff changeset
201 <Hsp_query-to>1037</Hsp_query-to>
d375502056f1 Uploaded
devteam
parents:
diff changeset
202 <Hsp_hit-from>1</Hsp_hit-from>
d375502056f1 Uploaded
devteam
parents:
diff changeset
203 <Hsp_hit-to>332</Hsp_hit-to>
d375502056f1 Uploaded
devteam
parents:
diff changeset
204 <Hsp_query-frame>3</Hsp_query-frame>
d375502056f1 Uploaded
devteam
parents:
diff changeset
205 <Hsp_hit-frame>0</Hsp_hit-frame>
d375502056f1 Uploaded
devteam
parents:
diff changeset
206 <Hsp_identity>283</Hsp_identity>
d375502056f1 Uploaded
devteam
parents:
diff changeset
207 <Hsp_positive>315</Hsp_positive>
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devteam
parents:
diff changeset
208 <Hsp_gaps>0</Hsp_gaps>
d375502056f1 Uploaded
devteam
parents:
diff changeset
209 <Hsp_align-len>332</Hsp_align-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
210 <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq>
d375502056f1 Uploaded
devteam
parents:
diff changeset
211 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq>
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devteam
parents:
diff changeset
212 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline>
d375502056f1 Uploaded
devteam
parents:
diff changeset
213 </Hsp>
d375502056f1 Uploaded
devteam
parents:
diff changeset
214 </Hit_hsps>
d375502056f1 Uploaded
devteam
parents:
diff changeset
215 </Hit>
d375502056f1 Uploaded
devteam
parents:
diff changeset
216 </Iteration_hits>
d375502056f1 Uploaded
devteam
parents:
diff changeset
217 <Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
218 <Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
219 <Statistics_db-num>0</Statistics_db-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
220 <Statistics_db-len>0</Statistics_db-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
221 <Statistics_hsp-len>32</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
222 <Statistics_eff-space>155472</Statistics_eff-space>
d375502056f1 Uploaded
devteam
parents:
diff changeset
223 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
224 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
225 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
226 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
227 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
228 </Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
229 <Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
230 <Iteration_iter-num>9</Iteration_iter-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
231 <Iteration_query-ID>Query_3</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
232 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
233 <Iteration_query-len>4301</Iteration_query-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
234 <Iteration_hits></Iteration_hits>
d375502056f1 Uploaded
devteam
parents:
diff changeset
235 <Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
236 <Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
237 <Statistics_db-num>0</Statistics_db-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
238 <Statistics_db-len>0</Statistics_db-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
239 <Statistics_hsp-len>39</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
240 <Statistics_eff-space>430746</Statistics_eff-space>
d375502056f1 Uploaded
devteam
parents:
diff changeset
241 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
242 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
243 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
244 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
245 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
246 <Iteration_message>No hits found</Iteration_message>
d375502056f1 Uploaded
devteam
parents:
diff changeset
247 </Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
248 <Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
249 <Iteration_iter-num>10</Iteration_iter-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
250 <Iteration_query-ID>Query_3</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
251 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
252 <Iteration_query-len>4301</Iteration_query-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
253 <Iteration_hits></Iteration_hits>
d375502056f1 Uploaded
devteam
parents:
diff changeset
254 <Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
255 <Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
256 <Statistics_db-num>0</Statistics_db-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
257 <Statistics_db-len>0</Statistics_db-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
258 <Statistics_hsp-len>39</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
259 <Statistics_eff-space>430746</Statistics_eff-space>
d375502056f1 Uploaded
devteam
parents:
diff changeset
260 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
261 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
262 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
263 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
264 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
265 <Iteration_message>No hits found</Iteration_message>
d375502056f1 Uploaded
devteam
parents:
diff changeset
266 </Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
267 <Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
268 <Iteration_iter-num>11</Iteration_iter-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
269 <Iteration_query-ID>Query_3</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
270 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
271 <Iteration_query-len>4301</Iteration_query-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
272 <Iteration_hits></Iteration_hits>
d375502056f1 Uploaded
devteam
parents:
diff changeset
273 <Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
274 <Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
275 <Statistics_db-num>0</Statistics_db-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
276 <Statistics_db-len>0</Statistics_db-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
277 <Statistics_hsp-len>39</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
278 <Statistics_eff-space>430746</Statistics_eff-space>
d375502056f1 Uploaded
devteam
parents:
diff changeset
279 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
280 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
281 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
282 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
283 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
284 <Iteration_message>No hits found</Iteration_message>
d375502056f1 Uploaded
devteam
parents:
diff changeset
285 </Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
286 <Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
287 <Iteration_iter-num>12</Iteration_iter-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
288 <Iteration_query-ID>Query_3</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
289 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
290 <Iteration_query-len>4301</Iteration_query-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
291 <Iteration_hits>
d375502056f1 Uploaded
devteam
parents:
diff changeset
292 <Hit>
d375502056f1 Uploaded
devteam
parents:
diff changeset
293 <Hit_num>1</Hit_num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
294 <Hit_id>Subject_4</Hit_id>
d375502056f1 Uploaded
devteam
parents:
diff changeset
295 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
296 <Hit_accession>Subject_4</Hit_accession>
d375502056f1 Uploaded
devteam
parents:
diff changeset
297 <Hit_len>348</Hit_len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
298 <Hit_hsps>
d375502056f1 Uploaded
devteam
parents:
diff changeset
299 <Hsp>
d375502056f1 Uploaded
devteam
parents:
diff changeset
300 <Hsp_num>1</Hsp_num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
301 <Hsp_bit-score>224.171990552935</Hsp_bit-score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
302 <Hsp_score>570</Hsp_score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
303 <Hsp_evalue>1.57574304751949e-62</Hsp_evalue>
d375502056f1 Uploaded
devteam
parents:
diff changeset
304 <Hsp_query-from>1</Hsp_query-from>
d375502056f1 Uploaded
devteam
parents:
diff changeset
305 <Hsp_query-to>333</Hsp_query-to>
d375502056f1 Uploaded
devteam
parents:
diff changeset
306 <Hsp_hit-from>11</Hsp_hit-from>
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devteam
parents:
diff changeset
307 <Hsp_hit-to>121</Hsp_hit-to>
d375502056f1 Uploaded
devteam
parents:
diff changeset
308 <Hsp_query-frame>1</Hsp_query-frame>
d375502056f1 Uploaded
devteam
parents:
diff changeset
309 <Hsp_hit-frame>0</Hsp_hit-frame>
d375502056f1 Uploaded
devteam
parents:
diff changeset
310 <Hsp_identity>107</Hsp_identity>
d375502056f1 Uploaded
devteam
parents:
diff changeset
311 <Hsp_positive>109</Hsp_positive>
d375502056f1 Uploaded
devteam
parents:
diff changeset
312 <Hsp_gaps>0</Hsp_gaps>
d375502056f1 Uploaded
devteam
parents:
diff changeset
313 <Hsp_align-len>111</Hsp_align-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
314 <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
d375502056f1 Uploaded
devteam
parents:
diff changeset
315 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
d375502056f1 Uploaded
devteam
parents:
diff changeset
316 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
d375502056f1 Uploaded
devteam
parents:
diff changeset
317 </Hsp>
d375502056f1 Uploaded
devteam
parents:
diff changeset
318 <Hsp>
d375502056f1 Uploaded
devteam
parents:
diff changeset
319 <Hsp_num>2</Hsp_num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
320 <Hsp_bit-score>129.412894877266</Hsp_bit-score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
321 <Hsp_score>324</Hsp_score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
322 <Hsp_evalue>5.28220874623366e-34</Hsp_evalue>
d375502056f1 Uploaded
devteam
parents:
diff changeset
323 <Hsp_query-from>3174</Hsp_query-from>
d375502056f1 Uploaded
devteam
parents:
diff changeset
324 <Hsp_query-to>3368</Hsp_query-to>
d375502056f1 Uploaded
devteam
parents:
diff changeset
325 <Hsp_hit-from>248</Hsp_hit-from>
d375502056f1 Uploaded
devteam
parents:
diff changeset
326 <Hsp_hit-to>312</Hsp_hit-to>
d375502056f1 Uploaded
devteam
parents:
diff changeset
327 <Hsp_query-frame>3</Hsp_query-frame>
d375502056f1 Uploaded
devteam
parents:
diff changeset
328 <Hsp_hit-frame>0</Hsp_hit-frame>
d375502056f1 Uploaded
devteam
parents:
diff changeset
329 <Hsp_identity>60</Hsp_identity>
d375502056f1 Uploaded
devteam
parents:
diff changeset
330 <Hsp_positive>64</Hsp_positive>
d375502056f1 Uploaded
devteam
parents:
diff changeset
331 <Hsp_gaps>0</Hsp_gaps>
d375502056f1 Uploaded
devteam
parents:
diff changeset
332 <Hsp_align-len>65</Hsp_align-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
333 <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq>
d375502056f1 Uploaded
devteam
parents:
diff changeset
334 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq>
d375502056f1 Uploaded
devteam
parents:
diff changeset
335 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
d375502056f1 Uploaded
devteam
parents:
diff changeset
336 </Hsp>
d375502056f1 Uploaded
devteam
parents:
diff changeset
337 <Hsp>
d375502056f1 Uploaded
devteam
parents:
diff changeset
338 <Hsp_num>3</Hsp_num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
339 <Hsp_bit-score>120.938504207085</Hsp_bit-score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
340 <Hsp_score>302</Hsp_score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
341 <Hsp_evalue>1.87871691987854e-31</Hsp_evalue>
d375502056f1 Uploaded
devteam
parents:
diff changeset
342 <Hsp_query-from>2855</Hsp_query-from>
d375502056f1 Uploaded
devteam
parents:
diff changeset
343 <Hsp_query-to>3022</Hsp_query-to>
d375502056f1 Uploaded
devteam
parents:
diff changeset
344 <Hsp_hit-from>177</Hsp_hit-from>
d375502056f1 Uploaded
devteam
parents:
diff changeset
345 <Hsp_hit-to>232</Hsp_hit-to>
d375502056f1 Uploaded
devteam
parents:
diff changeset
346 <Hsp_query-frame>2</Hsp_query-frame>
d375502056f1 Uploaded
devteam
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diff changeset
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diff changeset
523 <Statistics_hsp-len>29</Statistics_hsp-len>
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devteam
parents:
diff changeset
524 <Statistics_eff-space>102080</Statistics_eff-space>
d375502056f1 Uploaded
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parents:
diff changeset
525 <Statistics_kappa>0.041</Statistics_kappa>
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diff changeset
526 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
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parents:
diff changeset
527 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
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diff changeset
528 </Statistics>
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diff changeset
529 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
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diff changeset
531 </Iteration>
d375502056f1 Uploaded
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diff changeset
532 <Iteration>
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diff changeset
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diff changeset
534 <Iteration_query-ID>Query_5</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
535 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
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diff changeset
536 <Iteration_query-len>1047</Iteration_query-len>
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diff changeset
537 <Iteration_hits></Iteration_hits>
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diff changeset
538 <Iteration_stat>
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parents:
diff changeset
539 <Statistics>
d375502056f1 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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d375502056f1 Uploaded
devteam
parents:
diff changeset
542 <Statistics_hsp-len>29</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
543 <Statistics_eff-space>102080</Statistics_eff-space>
d375502056f1 Uploaded
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parents:
diff changeset
544 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
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parents:
diff changeset
545 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
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parents:
diff changeset
546 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
547 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
548 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
549 <Iteration_message>No hits found</Iteration_message>
d375502056f1 Uploaded
devteam
parents:
diff changeset
550 </Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
551 <Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
552 <Iteration_iter-num>19</Iteration_iter-num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
553 <Iteration_query-ID>Query_5</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
554 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
555 <Iteration_query-len>1047</Iteration_query-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
556 <Iteration_hits></Iteration_hits>
d375502056f1 Uploaded
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diff changeset
557 <Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
558 <Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
559 <Statistics_db-num>0</Statistics_db-num>
d375502056f1 Uploaded
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diff changeset
560 <Statistics_db-len>0</Statistics_db-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
561 <Statistics_hsp-len>29</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
562 <Statistics_eff-space>102080</Statistics_eff-space>
d375502056f1 Uploaded
devteam
parents:
diff changeset
563 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
564 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
565 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
566 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
567 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
568 <Iteration_message>No hits found</Iteration_message>
d375502056f1 Uploaded
devteam
parents:
diff changeset
569 </Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
570 <Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
571 <Iteration_iter-num>20</Iteration_iter-num>
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devteam
parents:
diff changeset
572 <Iteration_query-ID>Query_5</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
573 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
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devteam
parents:
diff changeset
574 <Iteration_query-len>1047</Iteration_query-len>
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diff changeset
575 <Iteration_hits>
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parents:
diff changeset
576 <Hit>
d375502056f1 Uploaded
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parents:
diff changeset
577 <Hit_num>1</Hit_num>
d375502056f1 Uploaded
devteam
parents:
diff changeset
578 <Hit_id>Subject_4</Hit_id>
d375502056f1 Uploaded
devteam
parents:
diff changeset
579 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
580 <Hit_accession>Subject_4</Hit_accession>
d375502056f1 Uploaded
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parents:
diff changeset
581 <Hit_len>348</Hit_len>
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parents:
diff changeset
582 <Hit_hsps>
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devteam
parents:
diff changeset
583 <Hsp>
d375502056f1 Uploaded
devteam
parents:
diff changeset
584 <Hsp_num>1</Hsp_num>
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devteam
parents:
diff changeset
585 <Hsp_bit-score>641.728330847346</Hsp_bit-score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
586 <Hsp_score>1654</Hsp_score>
d375502056f1 Uploaded
devteam
parents:
diff changeset
587 <Hsp_evalue>0</Hsp_evalue>
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devteam
parents:
diff changeset
588 <Hsp_query-from>1</Hsp_query-from>
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devteam
parents:
diff changeset
589 <Hsp_query-to>1044</Hsp_query-to>
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devteam
parents:
diff changeset
590 <Hsp_hit-from>1</Hsp_hit-from>
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parents:
diff changeset
591 <Hsp_hit-to>348</Hsp_hit-to>
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parents:
diff changeset
592 <Hsp_query-frame>1</Hsp_query-frame>
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devteam
parents:
diff changeset
593 <Hsp_hit-frame>0</Hsp_hit-frame>
d375502056f1 Uploaded
devteam
parents:
diff changeset
594 <Hsp_identity>325</Hsp_identity>
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devteam
parents:
diff changeset
595 <Hsp_positive>337</Hsp_positive>
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parents:
diff changeset
596 <Hsp_gaps>0</Hsp_gaps>
d375502056f1 Uploaded
devteam
parents:
diff changeset
597 <Hsp_align-len>348</Hsp_align-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
598 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq>
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devteam
parents:
diff changeset
599 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq>
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devteam
parents:
diff changeset
600 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
d375502056f1 Uploaded
devteam
parents:
diff changeset
601 </Hsp>
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devteam
parents:
diff changeset
602 </Hit_hsps>
d375502056f1 Uploaded
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parents:
diff changeset
603 </Hit>
d375502056f1 Uploaded
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parents:
diff changeset
604 </Iteration_hits>
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parents:
diff changeset
605 <Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
606 <Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
607 <Statistics_db-num>0</Statistics_db-num>
d375502056f1 Uploaded
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parents:
diff changeset
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d375502056f1 Uploaded
devteam
parents:
diff changeset
609 <Statistics_hsp-len>29</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
610 <Statistics_eff-space>102080</Statistics_eff-space>
d375502056f1 Uploaded
devteam
parents:
diff changeset
611 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
612 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
613 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
614 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
615 </Iteration_stat>
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devteam
parents:
diff changeset
616 </Iteration>
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devteam
parents:
diff changeset
617 <Iteration>
d375502056f1 Uploaded
devteam
parents:
diff changeset
618 <Iteration_iter-num>21</Iteration_iter-num>
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devteam
parents:
diff changeset
619 <Iteration_query-ID>Query_6</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
620 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
621 <Iteration_query-len>1344</Iteration_query-len>
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devteam
parents:
diff changeset
622 <Iteration_hits></Iteration_hits>
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parents:
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623 <Iteration_stat>
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devteam
parents:
diff changeset
624 <Statistics>
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parents:
diff changeset
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d375502056f1 Uploaded
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parents:
diff changeset
626 <Statistics_db-len>0</Statistics_db-len>
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parents:
diff changeset
627 <Statistics_hsp-len>31</Statistics_hsp-len>
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devteam
parents:
diff changeset
628 <Statistics_eff-space>132189</Statistics_eff-space>
d375502056f1 Uploaded
devteam
parents:
diff changeset
629 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
630 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
631 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
632 </Statistics>
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devteam
parents:
diff changeset
633 </Iteration_stat>
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devteam
parents:
diff changeset
634 <Iteration_message>No hits found</Iteration_message>
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parents:
diff changeset
635 </Iteration>
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devteam
parents:
diff changeset
636 <Iteration>
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parents:
diff changeset
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devteam
parents:
diff changeset
638 <Iteration_query-ID>Query_6</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
639 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
640 <Iteration_query-len>1344</Iteration_query-len>
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parents:
diff changeset
641 <Iteration_hits></Iteration_hits>
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parents:
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642 <Iteration_stat>
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parents:
diff changeset
643 <Statistics>
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parents:
diff changeset
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parents:
diff changeset
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devteam
parents:
diff changeset
646 <Statistics_hsp-len>31</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
647 <Statistics_eff-space>132189</Statistics_eff-space>
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devteam
parents:
diff changeset
648 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
649 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
650 <Statistics_entropy>0.14</Statistics_entropy>
d375502056f1 Uploaded
devteam
parents:
diff changeset
651 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
652 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
653 <Iteration_message>No hits found</Iteration_message>
d375502056f1 Uploaded
devteam
parents:
diff changeset
654 </Iteration>
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devteam
parents:
diff changeset
655 <Iteration>
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devteam
parents:
diff changeset
656 <Iteration_iter-num>23</Iteration_iter-num>
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devteam
parents:
diff changeset
657 <Iteration_query-ID>Query_6</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
658 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
659 <Iteration_query-len>1344</Iteration_query-len>
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devteam
parents:
diff changeset
660 <Iteration_hits></Iteration_hits>
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parents:
diff changeset
661 <Iteration_stat>
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devteam
parents:
diff changeset
662 <Statistics>
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devteam
parents:
diff changeset
663 <Statistics_db-num>0</Statistics_db-num>
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devteam
parents:
diff changeset
664 <Statistics_db-len>0</Statistics_db-len>
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devteam
parents:
diff changeset
665 <Statistics_hsp-len>31</Statistics_hsp-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
666 <Statistics_eff-space>132189</Statistics_eff-space>
d375502056f1 Uploaded
devteam
parents:
diff changeset
667 <Statistics_kappa>0.041</Statistics_kappa>
d375502056f1 Uploaded
devteam
parents:
diff changeset
668 <Statistics_lambda>0.267</Statistics_lambda>
d375502056f1 Uploaded
devteam
parents:
diff changeset
669 <Statistics_entropy>0.14</Statistics_entropy>
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devteam
parents:
diff changeset
670 </Statistics>
d375502056f1 Uploaded
devteam
parents:
diff changeset
671 </Iteration_stat>
d375502056f1 Uploaded
devteam
parents:
diff changeset
672 <Iteration_message>No hits found</Iteration_message>
d375502056f1 Uploaded
devteam
parents:
diff changeset
673 </Iteration>
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devteam
parents:
diff changeset
674 <Iteration>
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devteam
parents:
diff changeset
675 <Iteration_iter-num>24</Iteration_iter-num>
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devteam
parents:
diff changeset
676 <Iteration_query-ID>Query_6</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
677 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
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devteam
parents:
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diff changeset
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parents:
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680 <Hit>
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parents:
diff changeset
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devteam
parents:
diff changeset
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d375502056f1 Uploaded
devteam
parents:
diff changeset
683 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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devteam
parents:
diff changeset
684 <Hit_accession>Subject_4</Hit_accession>
d375502056f1 Uploaded
devteam
parents:
diff changeset
685 <Hit_len>348</Hit_len>
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parents:
diff changeset
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parents:
diff changeset
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devteam
parents:
diff changeset
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devteam
parents:
diff changeset
689 <Hsp_bit-score>559.295621601033</Hsp_bit-score>
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devteam
parents:
diff changeset
690 <Hsp_score>1440</Hsp_score>
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devteam
parents:
diff changeset
691 <Hsp_evalue>6.32632556748138e-164</Hsp_evalue>
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devteam
parents:
diff changeset
692 <Hsp_query-from>23</Hsp_query-from>
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devteam
parents:
diff changeset
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devteam
parents:
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parents:
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parents:
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d375502056f1 Uploaded
devteam
parents:
diff changeset
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devteam
parents:
diff changeset
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devteam
parents:
diff changeset
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d375502056f1 Uploaded
devteam
parents:
diff changeset
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d375502056f1 Uploaded
devteam
parents:
diff changeset
702 <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEED</Hsp_qseq>
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703 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq>
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704 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++</Hsp_midline>
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705 </Hsp>
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706 </Hit_hsps>
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707 </Hit>
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708 </Iteration_hits>
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709 <Iteration_stat>
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710 <Statistics>
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711 <Statistics_db-num>0</Statistics_db-num>
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712 <Statistics_db-len>0</Statistics_db-len>
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713 <Statistics_hsp-len>31</Statistics_hsp-len>
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714 <Statistics_eff-space>132189</Statistics_eff-space>
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715 <Statistics_kappa>0.041</Statistics_kappa>
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716 <Statistics_lambda>0.267</Statistics_lambda>
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717 <Statistics_entropy>0.14</Statistics_entropy>
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718 </Statistics>
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719 </Iteration_stat>
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720 </Iteration>
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721 </BlastOutput_iterations>
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722 </BlastOutput>