Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/blastx_rhodopsin_vs_four_human.xml @ 9:9dabbfd73c8a draft
Uploaded v0.0.19, adds wrappers for rpsblast and rpstblastn with new blastdb_d.loc file for their protein domain database.
Also includes other minor improvements.
author | peterjc |
---|---|
date | Thu, 25 Apr 2013 09:38:37 -0400 |
parents | 1f546099212f |
children | 4c4a0da938ff |
rev | line source |
---|---|
0 | 1 <?xml version="1.0"?> |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
0 | 3 <BlastOutput> |
4 <BlastOutput_program>blastx</BlastOutput_program> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
5 <BlastOutput_version>BLASTX 2.2.26+</BlastOutput_version> |
0 | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
7 <BlastOutput_db></BlastOutput_db> | |
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | |
9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> | |
10 <BlastOutput_query-len>1047</BlastOutput_query-len> | |
11 <BlastOutput_param> | |
12 <Parameters> | |
13 <Parameters_matrix>BLOSUM62</Parameters_matrix> | |
14 <Parameters_expect>1e-10</Parameters_expect> | |
15 <Parameters_gap-open>11</Parameters_gap-open> | |
16 <Parameters_gap-extend>1</Parameters_gap-extend> | |
17 <Parameters_filter>L;</Parameters_filter> | |
18 </Parameters> | |
19 </BlastOutput_param> | |
20 <BlastOutput_iterations> | |
21 <Iteration> | |
22 <Iteration_iter-num>1</Iteration_iter-num> | |
23 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
25 <Iteration_query-len>1047</Iteration_query-len> | |
26 <Iteration_hits></Iteration_hits> | |
27 <Iteration_stat> | |
28 <Statistics> | |
29 <Statistics_db-num>0</Statistics_db-num> | |
30 <Statistics_db-len>0</Statistics_db-len> | |
31 <Statistics_hsp-len>29</Statistics_hsp-len> | |
32 <Statistics_eff-space>102080</Statistics_eff-space> | |
33 <Statistics_kappa>0.041</Statistics_kappa> | |
34 <Statistics_lambda>0.267</Statistics_lambda> | |
35 <Statistics_entropy>0.14</Statistics_entropy> | |
36 </Statistics> | |
37 </Iteration_stat> | |
38 <Iteration_message>No hits found</Iteration_message> | |
39 </Iteration> | |
40 <Iteration> | |
41 <Iteration_iter-num>2</Iteration_iter-num> | |
42 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
43 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
44 <Iteration_query-len>1047</Iteration_query-len> | |
45 <Iteration_hits></Iteration_hits> | |
46 <Iteration_stat> | |
47 <Statistics> | |
48 <Statistics_db-num>0</Statistics_db-num> | |
49 <Statistics_db-len>0</Statistics_db-len> | |
50 <Statistics_hsp-len>29</Statistics_hsp-len> | |
51 <Statistics_eff-space>102080</Statistics_eff-space> | |
52 <Statistics_kappa>0.041</Statistics_kappa> | |
53 <Statistics_lambda>0.267</Statistics_lambda> | |
54 <Statistics_entropy>0.14</Statistics_entropy> | |
55 </Statistics> | |
56 </Iteration_stat> | |
57 <Iteration_message>No hits found</Iteration_message> | |
58 </Iteration> | |
59 <Iteration> | |
60 <Iteration_iter-num>3</Iteration_iter-num> | |
61 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
62 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
63 <Iteration_query-len>1047</Iteration_query-len> | |
64 <Iteration_hits></Iteration_hits> | |
65 <Iteration_stat> | |
66 <Statistics> | |
67 <Statistics_db-num>0</Statistics_db-num> | |
68 <Statistics_db-len>0</Statistics_db-len> | |
69 <Statistics_hsp-len>29</Statistics_hsp-len> | |
70 <Statistics_eff-space>102080</Statistics_eff-space> | |
71 <Statistics_kappa>0.041</Statistics_kappa> | |
72 <Statistics_lambda>0.267</Statistics_lambda> | |
73 <Statistics_entropy>0.14</Statistics_entropy> | |
74 </Statistics> | |
75 </Iteration_stat> | |
76 <Iteration_message>No hits found</Iteration_message> | |
77 </Iteration> | |
78 <Iteration> | |
79 <Iteration_iter-num>4</Iteration_iter-num> | |
80 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
81 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
82 <Iteration_query-len>1047</Iteration_query-len> | |
83 <Iteration_hits> | |
84 <Hit> | |
85 <Hit_num>1</Hit_num> | |
86 <Hit_id>Subject_4</Hit_id> | |
87 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
88 <Hit_accession>Subject_4</Hit_accession> | |
89 <Hit_len>348</Hit_len> | |
90 <Hit_hsps> | |
91 <Hsp> | |
92 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
93 <Hsp_bit-score>662.144</Hsp_bit-score> |
0 | 94 <Hsp_score>1707</Hsp_score> |
95 <Hsp_evalue>0</Hsp_evalue> | |
96 <Hsp_query-from>1</Hsp_query-from> | |
97 <Hsp_query-to>1044</Hsp_query-to> | |
98 <Hsp_hit-from>1</Hsp_hit-from> | |
99 <Hsp_hit-to>348</Hsp_hit-to> | |
100 <Hsp_query-frame>1</Hsp_query-frame> | |
101 <Hsp_hit-frame>0</Hsp_hit-frame> | |
102 <Hsp_identity>336</Hsp_identity> | |
103 <Hsp_positive>343</Hsp_positive> | |
104 <Hsp_gaps>0</Hsp_gaps> | |
105 <Hsp_align-len>348</Hsp_align-len> | |
106 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> | |
107 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> | |
108 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> | |
109 </Hsp> | |
110 </Hit_hsps> | |
111 </Hit> | |
112 </Iteration_hits> | |
113 <Iteration_stat> | |
114 <Statistics> | |
115 <Statistics_db-num>0</Statistics_db-num> | |
116 <Statistics_db-len>0</Statistics_db-len> | |
117 <Statistics_hsp-len>29</Statistics_hsp-len> | |
118 <Statistics_eff-space>102080</Statistics_eff-space> | |
119 <Statistics_kappa>0.041</Statistics_kappa> | |
120 <Statistics_lambda>0.267</Statistics_lambda> | |
121 <Statistics_entropy>0.14</Statistics_entropy> | |
122 </Statistics> | |
123 </Iteration_stat> | |
124 </Iteration> | |
125 <Iteration> | |
126 <Iteration_iter-num>5</Iteration_iter-num> | |
127 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
128 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
129 <Iteration_query-len>1574</Iteration_query-len> | |
130 <Iteration_hits></Iteration_hits> | |
131 <Iteration_stat> | |
132 <Statistics> | |
133 <Statistics_db-num>0</Statistics_db-num> | |
134 <Statistics_db-len>0</Statistics_db-len> | |
135 <Statistics_hsp-len>32</Statistics_hsp-len> | |
136 <Statistics_eff-space>155472</Statistics_eff-space> | |
137 <Statistics_kappa>0.041</Statistics_kappa> | |
138 <Statistics_lambda>0.267</Statistics_lambda> | |
139 <Statistics_entropy>0.14</Statistics_entropy> | |
140 </Statistics> | |
141 </Iteration_stat> | |
142 <Iteration_message>No hits found</Iteration_message> | |
143 </Iteration> | |
144 <Iteration> | |
145 <Iteration_iter-num>6</Iteration_iter-num> | |
146 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
147 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
148 <Iteration_query-len>1574</Iteration_query-len> | |
149 <Iteration_hits></Iteration_hits> | |
150 <Iteration_stat> | |
151 <Statistics> | |
152 <Statistics_db-num>0</Statistics_db-num> | |
153 <Statistics_db-len>0</Statistics_db-len> | |
154 <Statistics_hsp-len>32</Statistics_hsp-len> | |
155 <Statistics_eff-space>155472</Statistics_eff-space> | |
156 <Statistics_kappa>0.041</Statistics_kappa> | |
157 <Statistics_lambda>0.267</Statistics_lambda> | |
158 <Statistics_entropy>0.14</Statistics_entropy> | |
159 </Statistics> | |
160 </Iteration_stat> | |
161 <Iteration_message>No hits found</Iteration_message> | |
162 </Iteration> | |
163 <Iteration> | |
164 <Iteration_iter-num>7</Iteration_iter-num> | |
165 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
166 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
167 <Iteration_query-len>1574</Iteration_query-len> | |
168 <Iteration_hits></Iteration_hits> | |
169 <Iteration_stat> | |
170 <Statistics> | |
171 <Statistics_db-num>0</Statistics_db-num> | |
172 <Statistics_db-len>0</Statistics_db-len> | |
173 <Statistics_hsp-len>32</Statistics_hsp-len> | |
174 <Statistics_eff-space>155472</Statistics_eff-space> | |
175 <Statistics_kappa>0.041</Statistics_kappa> | |
176 <Statistics_lambda>0.267</Statistics_lambda> | |
177 <Statistics_entropy>0.14</Statistics_entropy> | |
178 </Statistics> | |
179 </Iteration_stat> | |
180 <Iteration_message>No hits found</Iteration_message> | |
181 </Iteration> | |
182 <Iteration> | |
183 <Iteration_iter-num>8</Iteration_iter-num> | |
184 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
185 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
186 <Iteration_query-len>1574</Iteration_query-len> | |
187 <Iteration_hits> | |
188 <Hit> | |
189 <Hit_num>1</Hit_num> | |
190 <Hit_id>Subject_4</Hit_id> | |
191 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
192 <Hit_accession>Subject_4</Hit_accession> | |
193 <Hit_len>348</Hit_len> | |
194 <Hit_hsps> | |
195 <Hsp> | |
196 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
197 <Hsp_bit-score>575.089</Hsp_bit-score> |
0 | 198 <Hsp_score>1481</Hsp_score> |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
199 <Hsp_evalue>0</Hsp_evalue> |
0 | 200 <Hsp_query-from>42</Hsp_query-from> |
201 <Hsp_query-to>1037</Hsp_query-to> | |
202 <Hsp_hit-from>1</Hsp_hit-from> | |
203 <Hsp_hit-to>332</Hsp_hit-to> | |
204 <Hsp_query-frame>3</Hsp_query-frame> | |
205 <Hsp_hit-frame>0</Hsp_hit-frame> | |
206 <Hsp_identity>283</Hsp_identity> | |
207 <Hsp_positive>315</Hsp_positive> | |
208 <Hsp_gaps>0</Hsp_gaps> | |
209 <Hsp_align-len>332</Hsp_align-len> | |
210 <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> | |
211 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> | |
212 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> | |
213 </Hsp> | |
214 </Hit_hsps> | |
215 </Hit> | |
216 </Iteration_hits> | |
217 <Iteration_stat> | |
218 <Statistics> | |
219 <Statistics_db-num>0</Statistics_db-num> | |
220 <Statistics_db-len>0</Statistics_db-len> | |
221 <Statistics_hsp-len>32</Statistics_hsp-len> | |
222 <Statistics_eff-space>155472</Statistics_eff-space> | |
223 <Statistics_kappa>0.041</Statistics_kappa> | |
224 <Statistics_lambda>0.267</Statistics_lambda> | |
225 <Statistics_entropy>0.14</Statistics_entropy> | |
226 </Statistics> | |
227 </Iteration_stat> | |
228 </Iteration> | |
229 <Iteration> | |
230 <Iteration_iter-num>9</Iteration_iter-num> | |
231 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
232 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
233 <Iteration_query-len>4301</Iteration_query-len> | |
234 <Iteration_hits></Iteration_hits> | |
235 <Iteration_stat> | |
236 <Statistics> | |
237 <Statistics_db-num>0</Statistics_db-num> | |
238 <Statistics_db-len>0</Statistics_db-len> | |
239 <Statistics_hsp-len>39</Statistics_hsp-len> | |
240 <Statistics_eff-space>430746</Statistics_eff-space> | |
241 <Statistics_kappa>0.041</Statistics_kappa> | |
242 <Statistics_lambda>0.267</Statistics_lambda> | |
243 <Statistics_entropy>0.14</Statistics_entropy> | |
244 </Statistics> | |
245 </Iteration_stat> | |
246 <Iteration_message>No hits found</Iteration_message> | |
247 </Iteration> | |
248 <Iteration> | |
249 <Iteration_iter-num>10</Iteration_iter-num> | |
250 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
251 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
252 <Iteration_query-len>4301</Iteration_query-len> | |
253 <Iteration_hits></Iteration_hits> | |
254 <Iteration_stat> | |
255 <Statistics> | |
256 <Statistics_db-num>0</Statistics_db-num> | |
257 <Statistics_db-len>0</Statistics_db-len> | |
258 <Statistics_hsp-len>39</Statistics_hsp-len> | |
259 <Statistics_eff-space>430746</Statistics_eff-space> | |
260 <Statistics_kappa>0.041</Statistics_kappa> | |
261 <Statistics_lambda>0.267</Statistics_lambda> | |
262 <Statistics_entropy>0.14</Statistics_entropy> | |
263 </Statistics> | |
264 </Iteration_stat> | |
265 <Iteration_message>No hits found</Iteration_message> | |
266 </Iteration> | |
267 <Iteration> | |
268 <Iteration_iter-num>11</Iteration_iter-num> | |
269 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
270 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
271 <Iteration_query-len>4301</Iteration_query-len> | |
272 <Iteration_hits></Iteration_hits> | |
273 <Iteration_stat> | |
274 <Statistics> | |
275 <Statistics_db-num>0</Statistics_db-num> | |
276 <Statistics_db-len>0</Statistics_db-len> | |
277 <Statistics_hsp-len>39</Statistics_hsp-len> | |
278 <Statistics_eff-space>430746</Statistics_eff-space> | |
279 <Statistics_kappa>0.041</Statistics_kappa> | |
280 <Statistics_lambda>0.267</Statistics_lambda> | |
281 <Statistics_entropy>0.14</Statistics_entropy> | |
282 </Statistics> | |
283 </Iteration_stat> | |
284 <Iteration_message>No hits found</Iteration_message> | |
285 </Iteration> | |
286 <Iteration> | |
287 <Iteration_iter-num>12</Iteration_iter-num> | |
288 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
289 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
290 <Iteration_query-len>4301</Iteration_query-len> | |
291 <Iteration_hits> | |
292 <Hit> | |
293 <Hit_num>1</Hit_num> | |
294 <Hit_id>Subject_4</Hit_id> | |
295 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
296 <Hit_accession>Subject_4</Hit_accession> | |
297 <Hit_len>348</Hit_len> | |
298 <Hit_hsps> | |
299 <Hsp> | |
300 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
301 <Hsp_bit-score>224.172</Hsp_bit-score> |
0 | 302 <Hsp_score>570</Hsp_score> |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
303 <Hsp_evalue>1.84906e-68</Hsp_evalue> |
0 | 304 <Hsp_query-from>1</Hsp_query-from> |
305 <Hsp_query-to>333</Hsp_query-to> | |
306 <Hsp_hit-from>11</Hsp_hit-from> | |
307 <Hsp_hit-to>121</Hsp_hit-to> | |
308 <Hsp_query-frame>1</Hsp_query-frame> | |
309 <Hsp_hit-frame>0</Hsp_hit-frame> | |
310 <Hsp_identity>107</Hsp_identity> | |
311 <Hsp_positive>109</Hsp_positive> | |
312 <Hsp_gaps>0</Hsp_gaps> | |
313 <Hsp_align-len>111</Hsp_align-len> | |
314 <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> | |
315 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> | |
316 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> | |
317 </Hsp> | |
318 <Hsp> | |
319 <Hsp_num>2</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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320 <Hsp_bit-score>129.413</Hsp_bit-score> |
0 | 321 <Hsp_score>324</Hsp_score> |
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322 <Hsp_evalue>4.62305e-36</Hsp_evalue> |
0 | 323 <Hsp_query-from>3174</Hsp_query-from> |
324 <Hsp_query-to>3368</Hsp_query-to> | |
325 <Hsp_hit-from>248</Hsp_hit-from> | |
326 <Hsp_hit-to>312</Hsp_hit-to> | |
327 <Hsp_query-frame>3</Hsp_query-frame> | |
328 <Hsp_hit-frame>0</Hsp_hit-frame> | |
329 <Hsp_identity>60</Hsp_identity> | |
330 <Hsp_positive>64</Hsp_positive> | |
331 <Hsp_gaps>0</Hsp_gaps> | |
332 <Hsp_align-len>65</Hsp_align-len> | |
333 <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> | |
334 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> | |
335 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> | |
336 </Hsp> | |
337 <Hsp> | |
338 <Hsp_num>3</Hsp_num> | |
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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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339 <Hsp_bit-score>120.939</Hsp_bit-score> |
0 | 340 <Hsp_score>302</Hsp_score> |
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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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341 <Hsp_evalue>2.85192e-33</Hsp_evalue> |
0 | 342 <Hsp_query-from>2855</Hsp_query-from> |
343 <Hsp_query-to>3022</Hsp_query-to> | |
344 <Hsp_hit-from>177</Hsp_hit-from> | |
345 <Hsp_hit-to>232</Hsp_hit-to> | |
346 <Hsp_query-frame>2</Hsp_query-frame> | |
347 <Hsp_hit-frame>0</Hsp_hit-frame> | |
348 <Hsp_identity>54</Hsp_identity> | |
349 <Hsp_positive>56</Hsp_positive> | |
350 <Hsp_gaps>0</Hsp_gaps> | |
351 <Hsp_align-len>56</Hsp_align-len> | |
352 <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKE</Hsp_qseq> | |
353 <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKE</Hsp_hseq> | |
354 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE</Hsp_midline> | |
355 </Hsp> | |
356 <Hsp> | |
357 <Hsp_num>4</Hsp_num> | |
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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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358 <Hsp_bit-score>118.242</Hsp_bit-score> |
0 | 359 <Hsp_score>295</Hsp_score> |
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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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360 <Hsp_evalue>2.16231e-32</Hsp_evalue> |
0 | 361 <Hsp_query-from>1404</Hsp_query-from> |
362 <Hsp_query-to>1580</Hsp_query-to> | |
363 <Hsp_hit-from>119</Hsp_hit-from> | |
364 <Hsp_hit-to>177</Hsp_hit-to> | |
365 <Hsp_query-frame>3</Hsp_query-frame> | |
366 <Hsp_hit-frame>0</Hsp_hit-frame> | |
367 <Hsp_identity>55</Hsp_identity> | |
368 <Hsp_positive>56</Hsp_positive> | |
369 <Hsp_gaps>0</Hsp_gaps> | |
370 <Hsp_align-len>59</Hsp_align-len> | |
371 <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> | |
372 <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> | |
373 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> | |
374 </Hsp> | |
375 <Hsp> | |
376 <Hsp_num>5</Hsp_num> | |
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377 <Hsp_bit-score>56.225</Hsp_bit-score> |
0 | 378 <Hsp_score>134</Hsp_score> |
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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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379 <Hsp_evalue>2.05678e-12</Hsp_evalue> |
0 | 380 <Hsp_query-from>4222</Hsp_query-from> |
381 <Hsp_query-to>4296</Hsp_query-to> | |
382 <Hsp_hit-from>312</Hsp_hit-from> | |
383 <Hsp_hit-to>336</Hsp_hit-to> | |
384 <Hsp_query-frame>1</Hsp_query-frame> | |
385 <Hsp_hit-frame>0</Hsp_hit-frame> | |
386 <Hsp_identity>23</Hsp_identity> | |
387 <Hsp_positive>24</Hsp_positive> | |
388 <Hsp_gaps>0</Hsp_gaps> | |
389 <Hsp_align-len>25</Hsp_align-len> | |
390 <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> | |
391 <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> | |
392 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> | |
393 </Hsp> | |
394 </Hit_hsps> | |
395 </Hit> | |
396 </Iteration_hits> | |
397 <Iteration_stat> | |
398 <Statistics> | |
399 <Statistics_db-num>0</Statistics_db-num> | |
400 <Statistics_db-len>0</Statistics_db-len> | |
401 <Statistics_hsp-len>39</Statistics_hsp-len> | |
402 <Statistics_eff-space>430746</Statistics_eff-space> | |
403 <Statistics_kappa>0.041</Statistics_kappa> | |
404 <Statistics_lambda>0.267</Statistics_lambda> | |
405 <Statistics_entropy>0.14</Statistics_entropy> | |
406 </Statistics> | |
407 </Iteration_stat> | |
408 </Iteration> | |
409 <Iteration> | |
410 <Iteration_iter-num>13</Iteration_iter-num> | |
411 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
412 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
413 <Iteration_query-len>983</Iteration_query-len> | |
414 <Iteration_hits></Iteration_hits> | |
415 <Iteration_stat> | |
416 <Statistics> | |
417 <Statistics_db-num>0</Statistics_db-num> | |
418 <Statistics_db-len>0</Statistics_db-len> | |
419 <Statistics_hsp-len>28</Statistics_hsp-len> | |
420 <Statistics_eff-space>95680</Statistics_eff-space> | |
421 <Statistics_kappa>0.041</Statistics_kappa> | |
422 <Statistics_lambda>0.267</Statistics_lambda> | |
423 <Statistics_entropy>0.14</Statistics_entropy> | |
424 </Statistics> | |
425 </Iteration_stat> | |
426 <Iteration_message>No hits found</Iteration_message> | |
427 </Iteration> | |
428 <Iteration> | |
429 <Iteration_iter-num>14</Iteration_iter-num> | |
430 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
431 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
432 <Iteration_query-len>983</Iteration_query-len> | |
433 <Iteration_hits></Iteration_hits> | |
434 <Iteration_stat> | |
435 <Statistics> | |
436 <Statistics_db-num>0</Statistics_db-num> | |
437 <Statistics_db-len>0</Statistics_db-len> | |
438 <Statistics_hsp-len>28</Statistics_hsp-len> | |
439 <Statistics_eff-space>95680</Statistics_eff-space> | |
440 <Statistics_kappa>0.041</Statistics_kappa> | |
441 <Statistics_lambda>0.267</Statistics_lambda> | |
442 <Statistics_entropy>0.14</Statistics_entropy> | |
443 </Statistics> | |
444 </Iteration_stat> | |
445 <Iteration_message>No hits found</Iteration_message> | |
446 </Iteration> | |
447 <Iteration> | |
448 <Iteration_iter-num>15</Iteration_iter-num> | |
449 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
450 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
451 <Iteration_query-len>983</Iteration_query-len> | |
452 <Iteration_hits></Iteration_hits> | |
453 <Iteration_stat> | |
454 <Statistics> | |
455 <Statistics_db-num>0</Statistics_db-num> | |
456 <Statistics_db-len>0</Statistics_db-len> | |
457 <Statistics_hsp-len>28</Statistics_hsp-len> | |
458 <Statistics_eff-space>95680</Statistics_eff-space> | |
459 <Statistics_kappa>0.041</Statistics_kappa> | |
460 <Statistics_lambda>0.267</Statistics_lambda> | |
461 <Statistics_entropy>0.14</Statistics_entropy> | |
462 </Statistics> | |
463 </Iteration_stat> | |
464 <Iteration_message>No hits found</Iteration_message> | |
465 </Iteration> | |
466 <Iteration> | |
467 <Iteration_iter-num>16</Iteration_iter-num> | |
468 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
469 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
470 <Iteration_query-len>983</Iteration_query-len> | |
471 <Iteration_hits> | |
472 <Hit> | |
473 <Hit_num>1</Hit_num> | |
474 <Hit_id>Subject_4</Hit_id> | |
475 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
476 <Hit_accession>Subject_4</Hit_accession> | |
477 <Hit_len>348</Hit_len> | |
478 <Hit_hsps> | |
479 <Hsp> | |
480 <Hsp_num>1</Hsp_num> | |
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1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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481 <Hsp_bit-score>613.994</Hsp_bit-score> |
0 | 482 <Hsp_score>1582</Hsp_score> |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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483 <Hsp_evalue>0</Hsp_evalue> |
0 | 484 <Hsp_query-from>1</Hsp_query-from> |
485 <Hsp_query-to>978</Hsp_query-to> | |
486 <Hsp_hit-from>11</Hsp_hit-from> | |
487 <Hsp_hit-to>336</Hsp_hit-to> | |
488 <Hsp_query-frame>1</Hsp_query-frame> | |
489 <Hsp_hit-frame>0</Hsp_hit-frame> | |
490 <Hsp_identity>310</Hsp_identity> | |
491 <Hsp_positive>322</Hsp_positive> | |
492 <Hsp_gaps>0</Hsp_gaps> | |
493 <Hsp_align-len>326</Hsp_align-len> | |
494 <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> | |
495 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> | |
496 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> | |
497 </Hsp> | |
498 </Hit_hsps> | |
499 </Hit> | |
500 </Iteration_hits> | |
501 <Iteration_stat> | |
502 <Statistics> | |
503 <Statistics_db-num>0</Statistics_db-num> | |
504 <Statistics_db-len>0</Statistics_db-len> | |
505 <Statistics_hsp-len>28</Statistics_hsp-len> | |
506 <Statistics_eff-space>95680</Statistics_eff-space> | |
507 <Statistics_kappa>0.041</Statistics_kappa> | |
508 <Statistics_lambda>0.267</Statistics_lambda> | |
509 <Statistics_entropy>0.14</Statistics_entropy> | |
510 </Statistics> | |
511 </Iteration_stat> | |
512 </Iteration> | |
513 <Iteration> | |
514 <Iteration_iter-num>17</Iteration_iter-num> | |
515 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
516 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
517 <Iteration_query-len>1047</Iteration_query-len> | |
518 <Iteration_hits></Iteration_hits> | |
519 <Iteration_stat> | |
520 <Statistics> | |
521 <Statistics_db-num>0</Statistics_db-num> | |
522 <Statistics_db-len>0</Statistics_db-len> | |
523 <Statistics_hsp-len>29</Statistics_hsp-len> | |
524 <Statistics_eff-space>102080</Statistics_eff-space> | |
525 <Statistics_kappa>0.041</Statistics_kappa> | |
526 <Statistics_lambda>0.267</Statistics_lambda> | |
527 <Statistics_entropy>0.14</Statistics_entropy> | |
528 </Statistics> | |
529 </Iteration_stat> | |
530 <Iteration_message>No hits found</Iteration_message> | |
531 </Iteration> | |
532 <Iteration> | |
533 <Iteration_iter-num>18</Iteration_iter-num> | |
534 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
535 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
536 <Iteration_query-len>1047</Iteration_query-len> | |
537 <Iteration_hits></Iteration_hits> | |
538 <Iteration_stat> | |
539 <Statistics> | |
540 <Statistics_db-num>0</Statistics_db-num> | |
541 <Statistics_db-len>0</Statistics_db-len> | |
542 <Statistics_hsp-len>29</Statistics_hsp-len> | |
543 <Statistics_eff-space>102080</Statistics_eff-space> | |
544 <Statistics_kappa>0.041</Statistics_kappa> | |
545 <Statistics_lambda>0.267</Statistics_lambda> | |
546 <Statistics_entropy>0.14</Statistics_entropy> | |
547 </Statistics> | |
548 </Iteration_stat> | |
549 <Iteration_message>No hits found</Iteration_message> | |
550 </Iteration> | |
551 <Iteration> | |
552 <Iteration_iter-num>19</Iteration_iter-num> | |
553 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
554 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
555 <Iteration_query-len>1047</Iteration_query-len> | |
556 <Iteration_hits></Iteration_hits> | |
557 <Iteration_stat> | |
558 <Statistics> | |
559 <Statistics_db-num>0</Statistics_db-num> | |
560 <Statistics_db-len>0</Statistics_db-len> | |
561 <Statistics_hsp-len>29</Statistics_hsp-len> | |
562 <Statistics_eff-space>102080</Statistics_eff-space> | |
563 <Statistics_kappa>0.041</Statistics_kappa> | |
564 <Statistics_lambda>0.267</Statistics_lambda> | |
565 <Statistics_entropy>0.14</Statistics_entropy> | |
566 </Statistics> | |
567 </Iteration_stat> | |
568 <Iteration_message>No hits found</Iteration_message> | |
569 </Iteration> | |
570 <Iteration> | |
571 <Iteration_iter-num>20</Iteration_iter-num> | |
572 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
573 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
574 <Iteration_query-len>1047</Iteration_query-len> | |
575 <Iteration_hits> | |
576 <Hit> | |
577 <Hit_num>1</Hit_num> | |
578 <Hit_id>Subject_4</Hit_id> | |
579 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
580 <Hit_accession>Subject_4</Hit_accession> | |
581 <Hit_len>348</Hit_len> | |
582 <Hit_hsps> | |
583 <Hsp> | |
584 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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diff
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585 <Hsp_bit-score>641.728</Hsp_bit-score> |
0 | 586 <Hsp_score>1654</Hsp_score> |
587 <Hsp_evalue>0</Hsp_evalue> | |
588 <Hsp_query-from>1</Hsp_query-from> | |
589 <Hsp_query-to>1044</Hsp_query-to> | |
590 <Hsp_hit-from>1</Hsp_hit-from> | |
591 <Hsp_hit-to>348</Hsp_hit-to> | |
592 <Hsp_query-frame>1</Hsp_query-frame> | |
593 <Hsp_hit-frame>0</Hsp_hit-frame> | |
594 <Hsp_identity>325</Hsp_identity> | |
595 <Hsp_positive>337</Hsp_positive> | |
596 <Hsp_gaps>0</Hsp_gaps> | |
597 <Hsp_align-len>348</Hsp_align-len> | |
598 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> | |
599 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> | |
600 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> | |
601 </Hsp> | |
602 </Hit_hsps> | |
603 </Hit> | |
604 </Iteration_hits> | |
605 <Iteration_stat> | |
606 <Statistics> | |
607 <Statistics_db-num>0</Statistics_db-num> | |
608 <Statistics_db-len>0</Statistics_db-len> | |
609 <Statistics_hsp-len>29</Statistics_hsp-len> | |
610 <Statistics_eff-space>102080</Statistics_eff-space> | |
611 <Statistics_kappa>0.041</Statistics_kappa> | |
612 <Statistics_lambda>0.267</Statistics_lambda> | |
613 <Statistics_entropy>0.14</Statistics_entropy> | |
614 </Statistics> | |
615 </Iteration_stat> | |
616 </Iteration> | |
617 <Iteration> | |
618 <Iteration_iter-num>21</Iteration_iter-num> | |
619 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
620 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
621 <Iteration_query-len>1344</Iteration_query-len> | |
622 <Iteration_hits></Iteration_hits> | |
623 <Iteration_stat> | |
624 <Statistics> | |
625 <Statistics_db-num>0</Statistics_db-num> | |
626 <Statistics_db-len>0</Statistics_db-len> | |
627 <Statistics_hsp-len>31</Statistics_hsp-len> | |
628 <Statistics_eff-space>132189</Statistics_eff-space> | |
629 <Statistics_kappa>0.041</Statistics_kappa> | |
630 <Statistics_lambda>0.267</Statistics_lambda> | |
631 <Statistics_entropy>0.14</Statistics_entropy> | |
632 </Statistics> | |
633 </Iteration_stat> | |
634 <Iteration_message>No hits found</Iteration_message> | |
635 </Iteration> | |
636 <Iteration> | |
637 <Iteration_iter-num>22</Iteration_iter-num> | |
638 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
639 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
640 <Iteration_query-len>1344</Iteration_query-len> | |
641 <Iteration_hits></Iteration_hits> | |
642 <Iteration_stat> | |
643 <Statistics> | |
644 <Statistics_db-num>0</Statistics_db-num> | |
645 <Statistics_db-len>0</Statistics_db-len> | |
646 <Statistics_hsp-len>31</Statistics_hsp-len> | |
647 <Statistics_eff-space>132189</Statistics_eff-space> | |
648 <Statistics_kappa>0.041</Statistics_kappa> | |
649 <Statistics_lambda>0.267</Statistics_lambda> | |
650 <Statistics_entropy>0.14</Statistics_entropy> | |
651 </Statistics> | |
652 </Iteration_stat> | |
653 <Iteration_message>No hits found</Iteration_message> | |
654 </Iteration> | |
655 <Iteration> | |
656 <Iteration_iter-num>23</Iteration_iter-num> | |
657 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
658 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
659 <Iteration_query-len>1344</Iteration_query-len> | |
660 <Iteration_hits></Iteration_hits> | |
661 <Iteration_stat> | |
662 <Statistics> | |
663 <Statistics_db-num>0</Statistics_db-num> | |
664 <Statistics_db-len>0</Statistics_db-len> | |
665 <Statistics_hsp-len>31</Statistics_hsp-len> | |
666 <Statistics_eff-space>132189</Statistics_eff-space> | |
667 <Statistics_kappa>0.041</Statistics_kappa> | |
668 <Statistics_lambda>0.267</Statistics_lambda> | |
669 <Statistics_entropy>0.14</Statistics_entropy> | |
670 </Statistics> | |
671 </Iteration_stat> | |
672 <Iteration_message>No hits found</Iteration_message> | |
673 </Iteration> | |
674 <Iteration> | |
675 <Iteration_iter-num>24</Iteration_iter-num> | |
676 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
677 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
678 <Iteration_query-len>1344</Iteration_query-len> | |
679 <Iteration_hits> | |
680 <Hit> | |
681 <Hit_num>1</Hit_num> | |
682 <Hit_id>Subject_4</Hit_id> | |
683 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
684 <Hit_accession>Subject_4</Hit_accession> | |
685 <Hit_len>348</Hit_len> | |
686 <Hit_hsps> | |
687 <Hsp> | |
688 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
689 <Hsp_bit-score>559.296</Hsp_bit-score> |
0 | 690 <Hsp_score>1440</Hsp_score> |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
691 <Hsp_evalue>0</Hsp_evalue> |
0 | 692 <Hsp_query-from>23</Hsp_query-from> |
693 <Hsp_query-to>1018</Hsp_query-to> | |
694 <Hsp_hit-from>1</Hsp_hit-from> | |
695 <Hsp_hit-to>332</Hsp_hit-to> | |
696 <Hsp_query-frame>2</Hsp_query-frame> | |
697 <Hsp_hit-frame>0</Hsp_hit-frame> | |
698 <Hsp_identity>272</Hsp_identity> | |
699 <Hsp_positive>307</Hsp_positive> | |
700 <Hsp_gaps>0</Hsp_gaps> | |
701 <Hsp_align-len>332</Hsp_align-len> | |
702 <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEED</Hsp_qseq> | |
703 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> | |
704 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++</Hsp_midline> | |
705 </Hsp> | |
706 </Hit_hsps> | |
707 </Hit> | |
708 </Iteration_hits> | |
709 <Iteration_stat> | |
710 <Statistics> | |
711 <Statistics_db-num>0</Statistics_db-num> | |
712 <Statistics_db-len>0</Statistics_db-len> | |
713 <Statistics_hsp-len>31</Statistics_hsp-len> | |
714 <Statistics_eff-space>132189</Statistics_eff-space> | |
715 <Statistics_kappa>0.041</Statistics_kappa> | |
716 <Statistics_lambda>0.267</Statistics_lambda> | |
717 <Statistics_entropy>0.14</Statistics_entropy> | |
718 </Statistics> | |
719 </Iteration_stat> | |
720 </Iteration> | |
721 </BlastOutput_iterations> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
722 </BlastOutput> |