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comparison test-data/blastx_rhodopsin_vs_four_human.xml @ 8:1f546099212f draft

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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author peterjc
date Tue, 19 Feb 2013 12:49:43 -0500
parents d375502056f1
children 4c4a0da938ff
comparison
equal deleted inserted replaced
7:4ce66a5401d0 8:1f546099212f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd"> 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput> 3 <BlastOutput>
4 <BlastOutput_program>blastx</BlastOutput_program> 4 <BlastOutput_program>blastx</BlastOutput_program>
5 <BlastOutput_version>BLASTX 2.2.25+</BlastOutput_version> 5 <BlastOutput_version>BLASTX 2.2.26+</BlastOutput_version>
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db></BlastOutput_db> 7 <BlastOutput_db></BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> 9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def>
10 <BlastOutput_query-len>1047</BlastOutput_query-len> 10 <BlastOutput_query-len>1047</BlastOutput_query-len>
88 <Hit_accession>Subject_4</Hit_accession> 88 <Hit_accession>Subject_4</Hit_accession>
89 <Hit_len>348</Hit_len> 89 <Hit_len>348</Hit_len>
90 <Hit_hsps> 90 <Hit_hsps>
91 <Hsp> 91 <Hsp>
92 <Hsp_num>1</Hsp_num> 92 <Hsp_num>1</Hsp_num>
93 <Hsp_bit-score>662.143908370966</Hsp_bit-score> 93 <Hsp_bit-score>662.144</Hsp_bit-score>
94 <Hsp_score>1707</Hsp_score> 94 <Hsp_score>1707</Hsp_score>
95 <Hsp_evalue>0</Hsp_evalue> 95 <Hsp_evalue>0</Hsp_evalue>
96 <Hsp_query-from>1</Hsp_query-from> 96 <Hsp_query-from>1</Hsp_query-from>
97 <Hsp_query-to>1044</Hsp_query-to> 97 <Hsp_query-to>1044</Hsp_query-to>
98 <Hsp_hit-from>1</Hsp_hit-from> 98 <Hsp_hit-from>1</Hsp_hit-from>
192 <Hit_accession>Subject_4</Hit_accession> 192 <Hit_accession>Subject_4</Hit_accession>
193 <Hit_len>348</Hit_len> 193 <Hit_len>348</Hit_len>
194 <Hit_hsps> 194 <Hit_hsps>
195 <Hsp> 195 <Hsp>
196 <Hsp_num>1</Hsp_num> 196 <Hsp_num>1</Hsp_num>
197 <Hsp_bit-score>575.088804213644</Hsp_bit-score> 197 <Hsp_bit-score>575.089</Hsp_bit-score>
198 <Hsp_score>1481</Hsp_score> 198 <Hsp_score>1481</Hsp_score>
199 <Hsp_evalue>1.31349806431671e-168</Hsp_evalue> 199 <Hsp_evalue>0</Hsp_evalue>
200 <Hsp_query-from>42</Hsp_query-from> 200 <Hsp_query-from>42</Hsp_query-from>
201 <Hsp_query-to>1037</Hsp_query-to> 201 <Hsp_query-to>1037</Hsp_query-to>
202 <Hsp_hit-from>1</Hsp_hit-from> 202 <Hsp_hit-from>1</Hsp_hit-from>
203 <Hsp_hit-to>332</Hsp_hit-to> 203 <Hsp_hit-to>332</Hsp_hit-to>
204 <Hsp_query-frame>3</Hsp_query-frame> 204 <Hsp_query-frame>3</Hsp_query-frame>
296 <Hit_accession>Subject_4</Hit_accession> 296 <Hit_accession>Subject_4</Hit_accession>
297 <Hit_len>348</Hit_len> 297 <Hit_len>348</Hit_len>
298 <Hit_hsps> 298 <Hit_hsps>
299 <Hsp> 299 <Hsp>
300 <Hsp_num>1</Hsp_num> 300 <Hsp_num>1</Hsp_num>
301 <Hsp_bit-score>224.171990552935</Hsp_bit-score> 301 <Hsp_bit-score>224.172</Hsp_bit-score>
302 <Hsp_score>570</Hsp_score> 302 <Hsp_score>570</Hsp_score>
303 <Hsp_evalue>1.57574304751949e-62</Hsp_evalue> 303 <Hsp_evalue>1.84906e-68</Hsp_evalue>
304 <Hsp_query-from>1</Hsp_query-from> 304 <Hsp_query-from>1</Hsp_query-from>
305 <Hsp_query-to>333</Hsp_query-to> 305 <Hsp_query-to>333</Hsp_query-to>
306 <Hsp_hit-from>11</Hsp_hit-from> 306 <Hsp_hit-from>11</Hsp_hit-from>
307 <Hsp_hit-to>121</Hsp_hit-to> 307 <Hsp_hit-to>121</Hsp_hit-to>
308 <Hsp_query-frame>1</Hsp_query-frame> 308 <Hsp_query-frame>1</Hsp_query-frame>
315 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> 315 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
316 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> 316 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
317 </Hsp> 317 </Hsp>
318 <Hsp> 318 <Hsp>
319 <Hsp_num>2</Hsp_num> 319 <Hsp_num>2</Hsp_num>
320 <Hsp_bit-score>129.412894877266</Hsp_bit-score> 320 <Hsp_bit-score>129.413</Hsp_bit-score>
321 <Hsp_score>324</Hsp_score> 321 <Hsp_score>324</Hsp_score>
322 <Hsp_evalue>5.28220874623366e-34</Hsp_evalue> 322 <Hsp_evalue>4.62305e-36</Hsp_evalue>
323 <Hsp_query-from>3174</Hsp_query-from> 323 <Hsp_query-from>3174</Hsp_query-from>
324 <Hsp_query-to>3368</Hsp_query-to> 324 <Hsp_query-to>3368</Hsp_query-to>
325 <Hsp_hit-from>248</Hsp_hit-from> 325 <Hsp_hit-from>248</Hsp_hit-from>
326 <Hsp_hit-to>312</Hsp_hit-to> 326 <Hsp_hit-to>312</Hsp_hit-to>
327 <Hsp_query-frame>3</Hsp_query-frame> 327 <Hsp_query-frame>3</Hsp_query-frame>
334 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> 334 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq>
335 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> 335 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
336 </Hsp> 336 </Hsp>
337 <Hsp> 337 <Hsp>
338 <Hsp_num>3</Hsp_num> 338 <Hsp_num>3</Hsp_num>
339 <Hsp_bit-score>120.938504207085</Hsp_bit-score> 339 <Hsp_bit-score>120.939</Hsp_bit-score>
340 <Hsp_score>302</Hsp_score> 340 <Hsp_score>302</Hsp_score>
341 <Hsp_evalue>1.87871691987854e-31</Hsp_evalue> 341 <Hsp_evalue>2.85192e-33</Hsp_evalue>
342 <Hsp_query-from>2855</Hsp_query-from> 342 <Hsp_query-from>2855</Hsp_query-from>
343 <Hsp_query-to>3022</Hsp_query-to> 343 <Hsp_query-to>3022</Hsp_query-to>
344 <Hsp_hit-from>177</Hsp_hit-from> 344 <Hsp_hit-from>177</Hsp_hit-from>
345 <Hsp_hit-to>232</Hsp_hit-to> 345 <Hsp_hit-to>232</Hsp_hit-to>
346 <Hsp_query-frame>2</Hsp_query-frame> 346 <Hsp_query-frame>2</Hsp_query-frame>
353 <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKE</Hsp_hseq> 353 <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKE</Hsp_hseq>
354 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE</Hsp_midline> 354 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE</Hsp_midline>
355 </Hsp> 355 </Hsp>
356 <Hsp> 356 <Hsp>
357 <Hsp_num>4</Hsp_num> 357 <Hsp_num>4</Hsp_num>
358 <Hsp_bit-score>118.242107175663</Hsp_bit-score> 358 <Hsp_bit-score>118.242</Hsp_bit-score>
359 <Hsp_score>295</Hsp_score> 359 <Hsp_score>295</Hsp_score>
360 <Hsp_evalue>1.21774886471054e-30</Hsp_evalue> 360 <Hsp_evalue>2.16231e-32</Hsp_evalue>
361 <Hsp_query-from>1404</Hsp_query-from> 361 <Hsp_query-from>1404</Hsp_query-from>
362 <Hsp_query-to>1580</Hsp_query-to> 362 <Hsp_query-to>1580</Hsp_query-to>
363 <Hsp_hit-from>119</Hsp_hit-from> 363 <Hsp_hit-from>119</Hsp_hit-from>
364 <Hsp_hit-to>177</Hsp_hit-to> 364 <Hsp_hit-to>177</Hsp_hit-to>
365 <Hsp_query-frame>3</Hsp_query-frame> 365 <Hsp_query-frame>3</Hsp_query-frame>
372 <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> 372 <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq>
373 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> 373 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
374 </Hsp> 374 </Hsp>
375 <Hsp> 375 <Hsp>
376 <Hsp_num>5</Hsp_num> 376 <Hsp_num>5</Hsp_num>
377 <Hsp_bit-score>56.2249754529693</Hsp_bit-score> 377 <Hsp_bit-score>56.225</Hsp_bit-score>
378 <Hsp_score>134</Hsp_score> 378 <Hsp_score>134</Hsp_score>
379 <Hsp_evalue>5.68296036241677e-12</Hsp_evalue> 379 <Hsp_evalue>2.05678e-12</Hsp_evalue>
380 <Hsp_query-from>4222</Hsp_query-from> 380 <Hsp_query-from>4222</Hsp_query-from>
381 <Hsp_query-to>4296</Hsp_query-to> 381 <Hsp_query-to>4296</Hsp_query-to>
382 <Hsp_hit-from>312</Hsp_hit-from> 382 <Hsp_hit-from>312</Hsp_hit-from>
383 <Hsp_hit-to>336</Hsp_hit-to> 383 <Hsp_hit-to>336</Hsp_hit-to>
384 <Hsp_query-frame>1</Hsp_query-frame> 384 <Hsp_query-frame>1</Hsp_query-frame>
476 <Hit_accession>Subject_4</Hit_accession> 476 <Hit_accession>Subject_4</Hit_accession>
477 <Hit_len>348</Hit_len> 477 <Hit_len>348</Hit_len>
478 <Hit_hsps> 478 <Hit_hsps>
479 <Hsp> 479 <Hsp>
480 <Hsp_num>1</Hsp_num> 480 <Hsp_num>1</Hsp_num>
481 <Hsp_bit-score>613.993961381297</Hsp_bit-score> 481 <Hsp_bit-score>613.994</Hsp_bit-score>
482 <Hsp_score>1582</Hsp_score> 482 <Hsp_score>1582</Hsp_score>
483 <Hsp_evalue>1.57028732393616e-180</Hsp_evalue> 483 <Hsp_evalue>0</Hsp_evalue>
484 <Hsp_query-from>1</Hsp_query-from> 484 <Hsp_query-from>1</Hsp_query-from>
485 <Hsp_query-to>978</Hsp_query-to> 485 <Hsp_query-to>978</Hsp_query-to>
486 <Hsp_hit-from>11</Hsp_hit-from> 486 <Hsp_hit-from>11</Hsp_hit-from>
487 <Hsp_hit-to>336</Hsp_hit-to> 487 <Hsp_hit-to>336</Hsp_hit-to>
488 <Hsp_query-frame>1</Hsp_query-frame> 488 <Hsp_query-frame>1</Hsp_query-frame>
580 <Hit_accession>Subject_4</Hit_accession> 580 <Hit_accession>Subject_4</Hit_accession>
581 <Hit_len>348</Hit_len> 581 <Hit_len>348</Hit_len>
582 <Hit_hsps> 582 <Hit_hsps>
583 <Hsp> 583 <Hsp>
584 <Hsp_num>1</Hsp_num> 584 <Hsp_num>1</Hsp_num>
585 <Hsp_bit-score>641.728330847346</Hsp_bit-score> 585 <Hsp_bit-score>641.728</Hsp_bit-score>
586 <Hsp_score>1654</Hsp_score> 586 <Hsp_score>1654</Hsp_score>
587 <Hsp_evalue>0</Hsp_evalue> 587 <Hsp_evalue>0</Hsp_evalue>
588 <Hsp_query-from>1</Hsp_query-from> 588 <Hsp_query-from>1</Hsp_query-from>
589 <Hsp_query-to>1044</Hsp_query-to> 589 <Hsp_query-to>1044</Hsp_query-to>
590 <Hsp_hit-from>1</Hsp_hit-from> 590 <Hsp_hit-from>1</Hsp_hit-from>
684 <Hit_accession>Subject_4</Hit_accession> 684 <Hit_accession>Subject_4</Hit_accession>
685 <Hit_len>348</Hit_len> 685 <Hit_len>348</Hit_len>
686 <Hit_hsps> 686 <Hit_hsps>
687 <Hsp> 687 <Hsp>
688 <Hsp_num>1</Hsp_num> 688 <Hsp_num>1</Hsp_num>
689 <Hsp_bit-score>559.295621601033</Hsp_bit-score> 689 <Hsp_bit-score>559.296</Hsp_bit-score>
690 <Hsp_score>1440</Hsp_score> 690 <Hsp_score>1440</Hsp_score>
691 <Hsp_evalue>6.32632556748138e-164</Hsp_evalue> 691 <Hsp_evalue>0</Hsp_evalue>
692 <Hsp_query-from>23</Hsp_query-from> 692 <Hsp_query-from>23</Hsp_query-from>
693 <Hsp_query-to>1018</Hsp_query-to> 693 <Hsp_query-to>1018</Hsp_query-to>
694 <Hsp_hit-from>1</Hsp_hit-from> 694 <Hsp_hit-from>1</Hsp_hit-from>
695 <Hsp_hit-to>332</Hsp_hit-to> 695 <Hsp_hit-to>332</Hsp_hit-to>
696 <Hsp_query-frame>2</Hsp_query-frame> 696 <Hsp_query-frame>2</Hsp_query-frame>