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comparison tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml @ 10:70e7dcbf6573 draft

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Uploaded v0.0.20, handles dependencies via package_blast_plus_2_2_26, development moved to GitHub, RST README, MIT licence, citation information, more tests, percentage identity option to BLASTN, cElementTree to ElementTree fallback.
author peterjc
date Mon, 23 Sep 2013 06:14:13 -0400
parents 9dabbfd73c8a
children 4c4a0da938ff
comparison
equal deleted inserted replaced
9:9dabbfd73c8a 10:70e7dcbf6573
1 <tool id="ncbi_tblastn_wrapper" name="NCBI BLAST+ tblastn" version="0.0.19"> 1 <tool id="ncbi_tblastn_wrapper" name="NCBI BLAST+ tblastn" version="0.0.20">
2 <description>Search translated nucleotide database with protein query sequence(s)</description> 2 <description>Search translated nucleotide database with protein query sequence(s)</description>
3 <!-- If job splitting is enabled, break up the query file into parts --> 3 <!-- If job splitting is enabled, break up the query file into parts -->
4 <parallelism method="multi" split_inputs="query" split_mode="to_size" split_size="1000" shared_inputs="subject,histdb" merge_outputs="output1"></parallelism> 4 <parallelism method="multi" split_inputs="query" split_mode="to_size" split_size="1000" shared_inputs="subject,histdb" merge_outputs="output1"></parallelism>
5 <requirements> 5 <requirements>
6 <requirement type="binary">tblastn</requirement> 6 <requirement type="binary">tblastn</requirement>
330 330
331 ------- 331 -------
332 332
333 **References** 333 **References**
334 334
335 Altschul et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. 1997. Nucleic Acids Res. 25:3389-3402. 335 If you use this Galaxy tool in work leading to a scientific publication please
336 336 cite the following papers:
337
338 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
339 Galaxy tools and workflows for sequence analysis with applications
340 in molecular plant pathology. PeerJ 1:e167
341 http://dx.doi.org/10.7717/peerj.167
342
343 Christiam Camacho et al. (2009).
344 BLAST+: architecture and applications.
345 BMC Bioinformatics. 15;10:421.
346 http://dx.doi.org/10.1186/1471-2105-10-421
347
348 This wrapper is available to install into other Galaxy Instances via the Galaxy
349 Tool Shed at http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
337 </help> 350 </help>
338 </tool> 351 </tool>