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comparison test-data/tblastn_four_human_vs_rhodopsin.xml @ 32:a52d2d93e595 draft

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Update for NCBI BLAST+ 2.14.1
author peterjc
date Thu, 26 Oct 2023 12:25:07 +0000
parents 5edc472ec434
children
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31:0e3cf9594bb7 32:a52d2d93e595
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput> 3 <BlastOutput>
4 <BlastOutput_program>tblastn</BlastOutput_program> 4 <BlastOutput_program>tblastn</BlastOutput_program>
5 <BlastOutput_version>TBLASTN 2.10.1+</BlastOutput_version> 5 <BlastOutput_version>TBLASTN 2.14.1+</BlastOutput_version>
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db></BlastOutput_db> 7 <BlastOutput_db></BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> 9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
10 <BlastOutput_query-len>406</BlastOutput_query-len> 10 <BlastOutput_query-len>406</BlastOutput_query-len>
147 <Hit_accession>Subject_4</Hit_accession> 147 <Hit_accession>Subject_4</Hit_accession>
148 <Hit_len>983</Hit_len> 148 <Hit_len>983</Hit_len>
149 <Hit_hsps> 149 <Hit_hsps>
150 <Hsp> 150 <Hsp>
151 <Hsp_num>1</Hsp_num> 151 <Hsp_num>1</Hsp_num>
152 <Hsp_bit-score>658.198</Hsp_bit-score> 152 <Hsp_bit-score>682.354</Hsp_bit-score>
153 <Hsp_score>1517</Hsp_score> 153 <Hsp_score>1573</Hsp_score>
154 <Hsp_evalue>0</Hsp_evalue> 154 <Hsp_evalue>0</Hsp_evalue>
155 <Hsp_query-from>11</Hsp_query-from> 155 <Hsp_query-from>11</Hsp_query-from>
156 <Hsp_query-to>336</Hsp_query-to> 156 <Hsp_query-to>336</Hsp_query-to>
157 <Hsp_hit-from>1</Hsp_hit-from> 157 <Hsp_hit-from>1</Hsp_hit-from>
158 <Hsp_hit-to>978</Hsp_hit-to> 158 <Hsp_hit-to>978</Hsp_hit-to>