Mercurial > repos > devteam > ncbi_blast_plus
comparison blastdb_p.loc.sample @ 0:d375502056f1 draft
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| author | devteam |
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| date | Fri, 17 Aug 2012 09:11:43 -0400 |
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| -1:000000000000 | 0:d375502056f1 |
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| 1 #This is a sample file distributed with Galaxy that is used to define a | |
| 2 #list of protein BLAST databases, using three columns tab separated | |
| 3 #(longer whitespace are TAB characters): | |
| 4 # | |
| 5 #<unique_id> <database_caption> <base_name_path> | |
| 6 # | |
| 7 #The captions typically contain spaces and might end with the build date. | |
| 8 #It is important that the actual database name does not have a space in it, | |
| 9 #and that the first tab that appears in the line is right before the path. | |
| 10 # | |
| 11 #So, for example, if your database is NR and the path to your base name | |
| 12 #is /data/blastdb/nr, then the blastdb_p.loc entry would look like this: | |
| 13 # | |
| 14 #nr NCBI NR (non redundant) /data/blastdb/nr | |
| 15 # | |
| 16 #and your /data/blastdb directory would contain all of the files associated | |
| 17 #with the database, /data/blastdb/nr.*. | |
| 18 # | |
| 19 #Your blastdb_p.loc file should include an entry per line for each "base name" | |
| 20 #you have stored. For example: | |
| 21 # | |
| 22 #nr_05Jun2010 NCBI NR (non redundant) 05 Jun 2010 /data/blastdb/05Jun2010/nr | |
| 23 #nr_15Aug2010 NCBI NR (non redundant) 15 Aug 2010 /data/blastdb/15Aug2010/nr | |
| 24 #...etc... | |
| 25 # | |
| 26 #See also blastdb.loc which is for any nucleotide BLAST database. | |
| 27 # |