diff tools/ncbi_blast_plus/ncbi_convert2blastmask_wrapper.xml @ 15:c16c30e9ad5b draft

Uploaded v0.1.03 (internal changes); v0.1.02 (BLAST+ 2.2.30 etc)
author peterjc
date Sun, 05 Jul 2015 10:37:27 -0400
parents 2fe07f50a41e
children b5f1f599d1fb
line wrap: on
line diff
--- a/tools/ncbi_blast_plus/ncbi_convert2blastmask_wrapper.xml	Mon Dec 01 05:59:16 2014 -0500
+++ b/tools/ncbi_blast_plus/ncbi_convert2blastmask_wrapper.xml	Sun Jul 05 10:37:27 2015 -0400
@@ -1,10 +1,10 @@
-<tool id="ncbi_convert2blastmask_wrapper" name="NCBI BLAST+ convert2blastmask" version="0.1.01">
+<tool id="ncbi_convert2blastmask_wrapper" name="NCBI BLAST+ convert2blastmask" version="0.1.03">
     <description>Convert masking information in lower-case masked FASTA input to file formats suitable for makeblastdb</description>
     <macros>
         <token name="@BINARY@">convert2blastmask</token>
         <import>ncbi_macros.xml</import>
     </macros>
-    <expand macro="requirements" />
+    <expand macro="preamble" />
     <command>
 ## The command is a Cheetah template which allows some Python based syntax.
 ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
@@ -16,7 +16,6 @@
 -out "$outfile"
 -outfmt $outformat
     </command>
-    <expand macro="stdio" />
     <inputs>
         <param name="infile" type="data" format="fasta" label="masked FASTA file"/> 
         <param name="masking_algorithm" type="select" label="Used masking algorithm">
@@ -80,7 +79,7 @@
 **References**
 
 If you use this Galaxy tool in work leading to a scientific publication please
-cite the following papers (a more specific paper covering this wrapper is planned):
+cite the following papers:
 
 @REFERENCES@
     </help>