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view ncbi_blast_plus/test-data/blastp_rhodopsin_vs_four_human.tabular @ 1:27d7e1deada4 draft

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Uploaded v0.0.12 of the NCBI BLAST+ wrappers. Implements genetic code option for translation searches. Changes <parallelism> to 1000 sequences at a time (to cope with very large sets of queries where BLAST+ can become memory hungry). Include warning that BLAST+ with subject FASTA gives pairwise e-values.
author peterjc
date Thu, 23 Aug 2012 07:24:38 -0400
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gi|57163783|ref|NP_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	348	1	348	0.0	 679
gi|3024260|sp|P56514.1|OPSD_BUFBU	sp|P08100|OPSD_HUMAN	83.33	354	53	2	1	354	1	348	6e-178	 605
gi|283855846|gb|ADB45242.1|	sp|P08100|OPSD_HUMAN	94.82	328	17	0	1	328	11	338	0.0	 630
gi|283855823|gb|ADB45229.1|	sp|P08100|OPSD_HUMAN	94.82	328	17	0	1	328	11	338	0.0	 630
gi|223523|prf||0811197A	sp|P08100|OPSD_HUMAN	93.10	348	23	1	1	347	1	348	0.0	 651
gi|12583665|dbj|BAB21486.1|	sp|P08100|OPSD_HUMAN	81.09	349	65	1	1	349	1	348	2e-172	 587