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view test-data/blastx_rhodopsin_vs_four_human_all.tabular @ 14:2fe07f50a41e draft

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Uploaded v0.1.01 - Requires blastdbd datatype (blast_datatypes v0.0.19). Support for makeprofiledb to create protein domain databases and use them in RPS-BLAST and RPS-TBLASTN. Tools now support GI and SeqID filters, and embed the citations.
author peterjc
date Mon, 01 Dec 2014 05:59:16 -0500
parents 623f727cdff1
children c16c30e9ad5b
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gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	1044	1	348	0.0	  639	sp|P08100|OPSD_HUMAN	1647	336	343	0	98.56	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A	0	gi|57163782|ref|NM_001009242.1|	gi|57163782|ref|NM_001009242.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	15KA71FL4TS79VA9ML34VI71LI7SASA21LI13TA1GV11	99	99	N/A	N/A	N/A	N/A	N/A
gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.24	332	49	0	42	1037	1	332	0.0	  551	sp|P08100|OPSD_HUMAN	1419	283	315	0	94.88	3	0	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE	1574	348	N/A	0	gi|2734705|gb|U59921.1|BBU59921	gi|2734705|gb|U59921.1|BBU59921	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	10IV1MF2KA20YF1IM1CA7LV7ML5IV17FV1NDHL4CG3VS1ML1ST1MLNH3IVLF1AP3YNVL36SG4VI7IV3SA2VA3LA9ML5VI26LM8RQ2CF30VIFA13FY2STNH3EN7VI7SASA9LM8IL2LI6FL1ED1DE	63	63	N/A	N/A	N/A	N/A	N/A
gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.40	111	4	0	1	333	11	121	3e-67	  220	sp|P08100|OPSD_HUMAN	561	107	109	0	98.20	1	0	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	5KA9HY61FL4TS28	22	8	N/A	N/A	N/A	N/A	N/A
gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.31	65	5	0	3174	3368	248	312	2e-35	  127	sp|P08100|OPSD_HUMAN	319	60	64	0	98.46	3	0	KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	18LV3GS19LI7SASA13	22	5	N/A	N/A	N/A	N/A	N/A
gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.53	59	5	0	2855	3031	177	235	2e-33	  121	sp|P08100|OPSD_HUMAN	304	54	57	0	96.61	2	0	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	2/0	6ML34VI14VARASA	22	4	N/A	N/A	N/A	N/A	N/A
gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.22	59	4	0	1404	1580	119	177	1e-25	97.1	sp|P08100|OPSD_HUMAN	240	55	56	0	94.92	3	0	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	1AG36LV1LF13VA4	22	4	N/A	N/A	N/A	N/A	N/A
gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.46	26	3	0	4222	4299	312	337	1e-12	57.0	sp|P08100|OPSD_HUMAN	136	23	24	0	92.31	1	0	QFRNCMLTTLCCGKNPLGDDEASTTA	QFRNCMLTTICCGKNPLGDDEASATV	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	9LI13TA1AV	22	2	N/A	N/A	N/A	N/A	N/A
gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.09	326	16	0	1	978	11	336	0.0	  589	sp|P08100|OPSD_HUMAN	1518	310	322	0	98.77	1	0	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	983	348	N/A	0	gi|283855822|gb|GQ290312.1|	gi|283855822|gb|GQ290312.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	5KA66ND4FL4TS5ML7AP49LV25ML34VI40VI6LV19VI11SASA21LI13TA1	99	99	N/A	N/A	N/A	N/A	N/A
gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.39	348	23	0	1	1044	1	348	0.0	  619	sp|P08100|OPSD_HUMAN	1596	325	337	0	96.84	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A	0	gi|18148870|dbj|AB062417.1|	gi|18148870|dbj|AB062417.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	15KA9AY22MV38FL4TS79VA9ML10PLHKEP1TV14IT2LM1VI47LV3GS11DN14TSSA1VI17VL2LI13TA13	99	99	N/A	N/A	N/A	N/A	N/A
gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.68	333	61	0	23	1021	1	333	0.0	  532	sp|P08100|OPSD_HUMAN	1371	272	307	0	92.19	2	0	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA	1344	348	N/A	0	gi|12583664|dbj|AB043817.1|	gi|12583664|dbj|AB043817.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	2/0	10IV1MF22AQ2AM1SA4FL2IVAL12IVEQ23FL4TS1ML3ML12IL14CS8WYMV5VMTS6SN6MAVF2TV6LA3FA20RLAK1GEIV10TVCV2ST2LMAIVI1SF4RQ2CF12EA3RK2RK6VI4SA2VI9WF8TN9SA5SA1LI3MV3CM6HN2IL2LI6FLEGEDEDDEGA	74	74	N/A	N/A	N/A	N/A	N/A