Mercurial > repos > devteam > ncbi_blast_plus
view test-data/blastx_rhodopsin_vs_four_human.xml @ 7:4ce66a5401d0 draft
Uploaded v0.0.16, declares explicit dependency on the 'blast_datatypes' repository.
| author | peterjc |
|---|---|
| date | Fri, 08 Feb 2013 05:51:26 -0500 |
| parents | d375502056f1 |
| children | 1f546099212f |
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<?xml version="1.0"?> <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>blastx</BlastOutput_program> <BlastOutput_version>BLASTX 2.2.25+</BlastOutput_version> <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> <BlastOutput_db></BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> <BlastOutput_query-len>1047</BlastOutput_query-len> <BlastOutput_param> <Parameters> <Parameters_matrix>BLOSUM62</Parameters_matrix> <Parameters_expect>1e-10</Parameters_expect> <Parameters_gap-open>11</Parameters_gap-open> <Parameters_gap-extend>1</Parameters_gap-extend> <Parameters_filter>L;</Parameters_filter> </Parameters> </BlastOutput_param> <BlastOutput_iterations> <Iteration> <Iteration_iter-num>1</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>29</Statistics_hsp-len> <Statistics_eff-space>102080</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>2</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>29</Statistics_hsp-len> <Statistics_eff-space>102080</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>3</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>29</Statistics_hsp-len> <Statistics_eff-space>102080</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>4</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_4</Hit_id> <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> <Hit_accession>Subject_4</Hit_accession> <Hit_len>348</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>662.143908370966</Hsp_bit-score> <Hsp_score>1707</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>1044</Hsp_query-to> <Hsp_hit-from>1</Hsp_hit-from> <Hsp_hit-to>348</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>336</Hsp_identity> <Hsp_positive>343</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>348</Hsp_align-len> <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>29</Statistics_hsp-len> <Statistics_eff-space>102080</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>5</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> <Iteration_query-len>1574</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>32</Statistics_hsp-len> <Statistics_eff-space>155472</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>6</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> <Iteration_query-len>1574</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>32</Statistics_hsp-len> <Statistics_eff-space>155472</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>7</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> <Iteration_query-len>1574</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>32</Statistics_hsp-len> <Statistics_eff-space>155472</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>8</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> <Iteration_query-len>1574</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_4</Hit_id> <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> <Hit_accession>Subject_4</Hit_accession> <Hit_len>348</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>575.088804213644</Hsp_bit-score> <Hsp_score>1481</Hsp_score> <Hsp_evalue>1.31349806431671e-168</Hsp_evalue> <Hsp_query-from>42</Hsp_query-from> <Hsp_query-to>1037</Hsp_query-to> <Hsp_hit-from>1</Hsp_hit-from> <Hsp_hit-to>332</Hsp_hit-to> <Hsp_query-frame>3</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>283</Hsp_identity> <Hsp_positive>315</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>332</Hsp_align-len> <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>32</Statistics_hsp-len> <Statistics_eff-space>155472</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>9</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> <Iteration_query-len>4301</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>39</Statistics_hsp-len> <Statistics_eff-space>430746</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>10</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> <Iteration_query-len>4301</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>39</Statistics_hsp-len> <Statistics_eff-space>430746</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>11</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> <Iteration_query-len>4301</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>39</Statistics_hsp-len> <Statistics_eff-space>430746</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>12</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> <Iteration_query-len>4301</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_4</Hit_id> <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> <Hit_accession>Subject_4</Hit_accession> <Hit_len>348</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>224.171990552935</Hsp_bit-score> <Hsp_score>570</Hsp_score> <Hsp_evalue>1.57574304751949e-62</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>333</Hsp_query-to> <Hsp_hit-from>11</Hsp_hit-from> <Hsp_hit-to>121</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>107</Hsp_identity> <Hsp_positive>109</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>111</Hsp_align-len> <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> </Hsp> <Hsp> <Hsp_num>2</Hsp_num> <Hsp_bit-score>129.412894877266</Hsp_bit-score> <Hsp_score>324</Hsp_score> <Hsp_evalue>5.28220874623366e-34</Hsp_evalue> <Hsp_query-from>3174</Hsp_query-from> <Hsp_query-to>3368</Hsp_query-to> <Hsp_hit-from>248</Hsp_hit-from> <Hsp_hit-to>312</Hsp_hit-to> <Hsp_query-frame>3</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>60</Hsp_identity> <Hsp_positive>64</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>65</Hsp_align-len> <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> </Hsp> <Hsp> <Hsp_num>3</Hsp_num> <Hsp_bit-score>120.938504207085</Hsp_bit-score> <Hsp_score>302</Hsp_score> <Hsp_evalue>1.87871691987854e-31</Hsp_evalue> <Hsp_query-from>2855</Hsp_query-from> <Hsp_query-to>3022</Hsp_query-to> <Hsp_hit-from>177</Hsp_hit-from> <Hsp_hit-to>232</Hsp_hit-to> <Hsp_query-frame>2</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>54</Hsp_identity> <Hsp_positive>56</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>56</Hsp_align-len> <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKE</Hsp_qseq> <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKE</Hsp_hseq> <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE</Hsp_midline> </Hsp> <Hsp> <Hsp_num>4</Hsp_num> <Hsp_bit-score>118.242107175663</Hsp_bit-score> <Hsp_score>295</Hsp_score> <Hsp_evalue>1.21774886471054e-30</Hsp_evalue> <Hsp_query-from>1404</Hsp_query-from> <Hsp_query-to>1580</Hsp_query-to> <Hsp_hit-from>119</Hsp_hit-from> <Hsp_hit-to>177</Hsp_hit-to> <Hsp_query-frame>3</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>55</Hsp_identity> <Hsp_positive>56</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>59</Hsp_align-len> <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> </Hsp> <Hsp> <Hsp_num>5</Hsp_num> <Hsp_bit-score>56.2249754529693</Hsp_bit-score> <Hsp_score>134</Hsp_score> <Hsp_evalue>5.68296036241677e-12</Hsp_evalue> <Hsp_query-from>4222</Hsp_query-from> <Hsp_query-to>4296</Hsp_query-to> <Hsp_hit-from>312</Hsp_hit-from> <Hsp_hit-to>336</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>23</Hsp_identity> <Hsp_positive>24</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>25</Hsp_align-len> <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>39</Statistics_hsp-len> <Statistics_eff-space>430746</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>13</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> <Iteration_query-len>983</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>28</Statistics_hsp-len> <Statistics_eff-space>95680</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>14</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> <Iteration_query-len>983</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>28</Statistics_hsp-len> <Statistics_eff-space>95680</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>15</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> <Iteration_query-len>983</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>28</Statistics_hsp-len> <Statistics_eff-space>95680</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>16</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> <Iteration_query-len>983</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_4</Hit_id> <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> <Hit_accession>Subject_4</Hit_accession> <Hit_len>348</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>613.993961381297</Hsp_bit-score> <Hsp_score>1582</Hsp_score> <Hsp_evalue>1.57028732393616e-180</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>978</Hsp_query-to> <Hsp_hit-from>11</Hsp_hit-from> <Hsp_hit-to>336</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>310</Hsp_identity> <Hsp_positive>322</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>326</Hsp_align-len> <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>28</Statistics_hsp-len> <Statistics_eff-space>95680</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>17</Iteration_iter-num> <Iteration_query-ID>Query_5</Iteration_query-ID> <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>29</Statistics_hsp-len> <Statistics_eff-space>102080</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>18</Iteration_iter-num> <Iteration_query-ID>Query_5</Iteration_query-ID> <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>29</Statistics_hsp-len> <Statistics_eff-space>102080</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>19</Iteration_iter-num> <Iteration_query-ID>Query_5</Iteration_query-ID> <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>29</Statistics_hsp-len> <Statistics_eff-space>102080</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>20</Iteration_iter-num> <Iteration_query-ID>Query_5</Iteration_query-ID> <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_4</Hit_id> <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> <Hit_accession>Subject_4</Hit_accession> <Hit_len>348</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>641.728330847346</Hsp_bit-score> <Hsp_score>1654</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>1044</Hsp_query-to> <Hsp_hit-from>1</Hsp_hit-from> <Hsp_hit-to>348</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>325</Hsp_identity> <Hsp_positive>337</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>348</Hsp_align-len> <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>29</Statistics_hsp-len> <Statistics_eff-space>102080</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>21</Iteration_iter-num> <Iteration_query-ID>Query_6</Iteration_query-ID> <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> <Iteration_query-len>1344</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>31</Statistics_hsp-len> <Statistics_eff-space>132189</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>22</Iteration_iter-num> <Iteration_query-ID>Query_6</Iteration_query-ID> <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> <Iteration_query-len>1344</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>31</Statistics_hsp-len> <Statistics_eff-space>132189</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>23</Iteration_iter-num> <Iteration_query-ID>Query_6</Iteration_query-ID> <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> <Iteration_query-len>1344</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>31</Statistics_hsp-len> <Statistics_eff-space>132189</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>24</Iteration_iter-num> <Iteration_query-ID>Query_6</Iteration_query-ID> <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> <Iteration_query-len>1344</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_4</Hit_id> <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> <Hit_accession>Subject_4</Hit_accession> <Hit_len>348</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>559.295621601033</Hsp_bit-score> <Hsp_score>1440</Hsp_score> <Hsp_evalue>6.32632556748138e-164</Hsp_evalue> <Hsp_query-from>23</Hsp_query-from> <Hsp_query-to>1018</Hsp_query-to> <Hsp_hit-from>1</Hsp_hit-from> <Hsp_hit-to>332</Hsp_hit-to> <Hsp_query-frame>2</Hsp_query-frame> <Hsp_hit-frame>0</Hsp_hit-frame> <Hsp_identity>272</Hsp_identity> <Hsp_positive>307</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>332</Hsp_align-len> <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEED</Hsp_qseq> <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>31</Statistics_hsp-len> <Statistics_eff-space>132189</Statistics_eff-space> <Statistics_kappa>0.041</Statistics_kappa> <Statistics_lambda>0.267</Statistics_lambda> <Statistics_entropy>0.14</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> </BlastOutput_iterations> </BlastOutput>