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view test-data/tblastx_rhodopsin_vs_three_human.tabular @ 10:70e7dcbf6573 draft

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Uploaded v0.0.20, handles dependencies via package_blast_plus_2_2_26, development moved to GitHub, RST README, MIT licence, citation information, more tests, percentage identity option to BLASTN, cElementTree to ElementTree fallback.
author peterjc
date Mon, 23 Sep 2013 06:14:13 -0400
parents
children 623f727cdff1
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gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	97.39	230	6	0	1	690	88	777	0.0	 559
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.12	102	6	0	742	1047	829	1134	0.0	 236
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	91.22	148	13	0	1046	603	1133	690	0.0	 308
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.32	88	5	0	566	303	653	390	0.0	 207
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	96.34	82	3	0	248	3	335	90	0.0	 182
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	83.33	204	34	0	18	629	105	716	4e-158	 404
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	75.28	89	22	0	780	1046	867	1133	4e-158	 161
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.28	203	38	0	609	1	696	88	5e-153	 360
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	80.60	67	13	0	916	716	1003	803	5e-153	 135
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	70.27	37	11	0	1047	937	1134	1024	5e-153	64.2
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	100.00	7	0	0	646	626	733	713	5e-153	24.0
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.23	65	7	0	460	266	547	353	4e-105	 167
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.58	48	5	0	184	41	271	128	4e-105	 104
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	77.78	45	10	0	882	748	969	835	4e-105	93.9
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	67.86	28	9	0	1045	962	1132	1049	4e-105	51.9
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	59.09	22	9	0	586	521	673	608	4e-105	33.1
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.40	86	16	0	296	553	383	640	2e-87	 185
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	84.38	32	5	0	11	106	98	193	2e-87	74.8
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	71.43	35	10	0	941	1045	1028	1132	2e-87	61.6
gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.44	18	1	0	794	847	881	934	2e-87	50.1
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	83.61	238	39	0	18	731	64	777	0.0	 507
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	82.35	85	15	0	783	1037	829	1083	0.0	 188
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	70.96	303	88	0	925	17	971	63	2e-130	 435
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	72.22	18	5	0	1027	974	1073	1020	2e-130	35.0
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	55.32	188	84	0	605	42	651	88	7e-89	 245
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	61.11	72	28	0	1037	822	1083	868	7e-89	91.3
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	49.02	204	104	0	29	640	75	686	4e-78	 197
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	66.04	53	18	0	860	1018	906	1064	4e-78	85.8
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	44.44	27	15	0	689	769	735	815	4e-78	32.2
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	47.47	198	104	0	633	40	679	86	4e-65	 177
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	68.09	47	15	0	1017	877	1063	923	4e-65	80.3
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	57.89	114	48	0	265	606	311	652	3e-46	 137
gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	46.30	54	29	0	19	180	65	226	3e-46	52.4
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.40	111	4	0	1	333	118	450	0.0	 264
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.31	65	5	0	3174	3368	829	1023	0.0	 151
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.43	56	2	0	2855	3022	616	783	0.0	 141
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.22	59	4	0	1404	1580	442	618	0.0	 138
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.00	25	2	0	4222	4296	1021	1095	0.0	64.3
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.89	9	1	0	3128	3154	783	809	0.0	22.6
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.38	111	24	0	333	1	450	118	7e-171	 212
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.75	80	9	0	3367	3128	1022	783	7e-171	 161
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.33	60	4	0	1582	1403	620	441	7e-171	 136
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.07	56	5	0	3021	2854	782	615	7e-171	 119
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	84.62	26	4	0	4301	4224	1100	1023	7e-171	52.8
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.83	72	3	0	218	3	335	120	8e-142	 152
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.78	63	14	0	3368	3180	1023	835	8e-142	 125
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	85.11	47	7	0	1544	1404	582	442	8e-142	 108
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.36	56	11	0	3022	2855	783	616	8e-142	 101
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	75.86	29	7	0	325	239	442	356	8e-142	58.3
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4287	4222	1086	1021	8e-142	48.7
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	90.91	11	1	0	3159	3127	814	782	8e-142	31.3
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.03	58	11	0	2854	3027	615	788	2e-122	 128
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	60	10	0	1403	1582	441	620	2e-122	 125
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.60	67	13	0	3	203	120	320	2e-122	 119
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.30	23	2	0	4220	4288	1019	1087	2e-122	53.8
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.26	23	5	0	266	334	383	451	2e-122	48.3
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.00	20	4	0	3308	3367	963	1022	2e-122	46.0
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	18	3	0	3226	3279	881	934	2e-122	40.5
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.39	51	10	0	154	2	271	119	1e-92	97.3
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	73.68	57	15	0	3366	3196	1021	851	1e-92	95.9
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.82	44	8	0	1521	1390	559	428	1e-92	95.0
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.00	20	1	0	332	273	449	390	1e-92	52.4
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4288	4223	1087	1022	1e-92	48.3
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	61.54	26	10	0	2912	2835	673	596	1e-92	37.7
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	69.57	23	7	0	3023	2955	784	716	1e-92	33.1
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	76.67	30	7	0	2	91	119	208	6e-43	68.0
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.11	45	4	0	1411	1545	449	583	6e-43	68.0
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.27	22	5	0	267	332	384	449	6e-43	45.1
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4224	4289	1023	1088	6e-43	44.1
gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	12	2	0	2856	2891	617	652	6e-43	25.4
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	95.91	220	9	0	1	660	118	777	0.0	 526
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	92.13	89	7	0	712	978	829	1095	0.0	 212
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.01	178	16	0	536	3	653	120	1e-178	 353
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.32	137	16	0	983	573	1100	690	1e-178	 277
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.43	319	72	0	3	959	120	1076	4e-174	 593
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	79.07	129	27	0	558	172	675	289	2e-133	 248
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	76.83	82	19	0	963	718	1080	835	2e-133	 159
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.09	44	7	0	133	2	250	119	2e-133	97.3
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	73.08	78	21	0	433	200	550	317	6e-102	 145
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	70.15	67	20	0	799	599	916	716	6e-102	 106
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	80.49	41	8	0	123	1	240	118	6e-102	84.5
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.78	27	6	0	553	473	670	590	6e-102	51.9
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	71.43	14	4	0	889	848	1006	965	6e-102	32.7
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.82	11	2	0	958	926	1075	1043	6e-102	28.6
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.85	33	5	0	239	337	356	454	4e-48	72.5
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	86.67	30	4	0	2	91	119	208	4e-48	71.2
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.40	43	8	0	404	532	521	649	4e-48	47.3
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.89	18	2	0	764	817	881	934	4e-48	44.6
gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	87.50	8	1	0	935	958	1052	1075	4e-48	21.7
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	93.91	230	14	0	1	690	88	777	0.0	 538
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	91.18	102	9	0	742	1047	829	1134	0.0	 233
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	88.83	188	21	0	566	3	653	90	0.0	 394
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	84.06	138	22	0	1046	633	1133	720	0.0	 260
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.11	228	75	0	684	1	771	88	7e-132	 333
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.27	110	36	0	1045	716	1132	803	7e-132	 141
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	70.20	151	45	0	3	455	90	542	1e-128	 236
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	64.04	89	32	0	780	1046	867	1133	1e-128	 136
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.22	74	25	0	510	731	597	818	1e-128	 111
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.04	106	36	0	242	559	329	646	2e-58	 161
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	85.71	21	3	0	92	154	179	241	2e-58	53.8
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	73.68	19	5	0	791	847	878	934	2e-58	39.1
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	61.29	62	24	0	424	239	511	326	4e-55	81.3
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	74.36	39	10	0	133	17	220	104	4e-55	69.8
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	65.71	35	12	0	882	778	969	865	4e-55	56.3
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	58.14	43	18	0	649	521	736	608	4e-55	50.6
gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.67	12	4	0	972	937	1059	1024	4e-55	23.9
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	82.13	235	42	0	11	715	76	780	0.0	 498
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	78.31	83	18	0	770	1018	835	1083	0.0	 177
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.29	332	92	0	1017	22	1082	87	1e-150	 516
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	48.30	147	76	0	712	272	777	337	2e-98	 169
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	54.17	72	33	0	1030	815	1095	880	2e-98	 103
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	47.83	69	36	0	220	14	285	79	2e-98	83.5
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.00	25	7	0	782	708	847	773	2e-98	45.1
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.00	75	33	0	532	756	597	821	5e-65	87.7
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	39.42	104	63	0	19	330	84	395	5e-65	86.8
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.90	58	25	0	829	1002	894	1067	5e-65	81.3
gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	50.00	30	15	0	388	477	453	542	5e-65	33.6