Mercurial > repos > devteam > ncbi_blast_plus
view test-data/blastn_rhodopsin_vs_three_human.xml @ 19:7f3c448e119b draft
v0.1.07 - fix macro problem in blastxml_to_tabular.xml, reenable .loc tests
author | peterjc |
---|---|
date | Thu, 19 Nov 2015 06:30:35 -0500 |
parents | 577d9c12411a |
children | 7538e2bfcd41 |
line wrap: on
line source
<?xml version="1.0"?> <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>blastn</BlastOutput_program> <BlastOutput_version>BLASTN 2.2.31+</BlastOutput_version> <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference> <BlastOutput_db></BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> <BlastOutput_query-len>1047</BlastOutput_query-len> <BlastOutput_param> <Parameters> <Parameters_expect>1e-40</Parameters_expect> <Parameters_sc-match>1</Parameters_sc-match> <Parameters_sc-mismatch>-2</Parameters_sc-mismatch> <Parameters_gap-open>0</Parameters_gap-open> <Parameters_gap-extend>0</Parameters_gap-extend> <Parameters_filter>L;m;</Parameters_filter> </Parameters> </BlastOutput_param> <BlastOutput_iterations> <Iteration> <Iteration_iter-num>1</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4933992</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>2</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4933992</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>3</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_3</Hit_id> <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> <Hit_accession>Subject_3</Hit_accession> <Hit_len>1213</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>1474.75</Hsp_bit-score> <Hsp_score>798</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>1047</Hsp_query-to> <Hsp_hit-from>88</Hsp_hit-from> <Hsp_hit-to>1134</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>964</Hsp_identity> <Hsp_positive>964</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>1047</Hsp_align-len> <Hsp_qseq>ATGAACGGGACGGAGGGCCCGAACTTCTACGTGCCCTTCTCCAACAAAACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTCCTGCTCATCGTGCTTGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACGGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCTGACCTCTTCATGGTCTTCGGTGGCTTCACCACCACCCTCTACACCTCTCTGCATGGATACTTTGTCTTTGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACACTGGGCGGTGAAATTGCCCTGTGGTCTTTGGTGGTCCTGGCCATTGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCATGCCATAATGGGCGTCGCTTTCACCTGGGTCATGGCACTGGCCTGCGCTGCACCCCCCCTCGTTGGTTGGTCCAGGTACATCCCTGAAGGCATGCAGTGTTCATGCGGGATCGACTACTACACACTCAAGCCAGAAGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATCGTCATCTTCTTTTGCTACGGGCAGCTTGTCTTCACAGTCAAGGAGGCGGCAGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCTGAGAAGGAGGTCACTCGCATGGTCATCATCATGGTCATTGCTTTCCTGATCTGTTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGGTCCAACTTTGGCCCCATCTTCATGACACTCCCGGCGTTCTTCGCAAAGTCCTCCTCCATCTACAACCCTGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACTACCCTCTGCTGTGGCAAGAACCCACTGGGTGATGACGAGGCTTCCACAACCGGTTCCAAGACGGAGACCAGCCAGGTGGCACCGGCCTAA</Hsp_qseq> <Hsp_hseq>ATGAATGGCACAGAAGGCCCTAACTTCTACGTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGATGAGGCCTCTGCTACCGTGTCCAAGACGGAGACGAGCCAGGTGGCCCCGGCCTAA</Hsp_hseq> <Hsp_midline>||||| || || || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||| |||| || ||||||||||||||||| || ||| ||||||| || || || |||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| |||||||| || ||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| || ||||| || | |||| |||||||||||||| ||||||||||| |||||||||</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4933992</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>4</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> <Iteration_query-len>1574</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>7453579</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>5</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> <Iteration_query-len>1574</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>7453579</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>6</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> <Iteration_query-len>1574</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>7453579</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>7</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> <Iteration_query-len>4301</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>16</Statistics_hsp-len> <Statistics_eff-space>20482300</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>8</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> <Iteration_query-len>4301</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>16</Statistics_hsp-len> <Statistics_eff-space>20482300</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>9</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> <Iteration_query-len>4301</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_3</Hit_id> <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> <Hit_accession>Subject_3</Hit_accession> <Hit_len>1213</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>460.936</Hsp_bit-score> <Hsp_score>249</Hsp_score> <Hsp_evalue>3.59583e-132</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>333</Hsp_query-to> <Hsp_hit-from>118</Hsp_hit-from> <Hsp_hit-to>450</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>305</Hsp_identity> <Hsp_positive>305</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>333</Hsp_align-len> <Hsp_qseq>GTGCCCTTCTCCAACAAGACAGGCGTGGTGCGCAGTCCCTTCGAGCATCCACAGTACTACCTGGCCGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTCGGCTTCCCCATCAACTTCCTCACGCTCTATGTCACGGTTCAGCACAAGAAGCTGCGTACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCCGACCTCTTCATGGTCTTCGGAGGCTTCACCACCACCCTCTACACCTCCCTGCATGGATACTTTGTCTTCGGGCCTACGGGATGCAATCTGGAGGGCTTTTTTGCCACCCTGGGAGGT</Hsp_qseq> <Hsp_hseq>GTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGT</Hsp_hseq> <Hsp_midline>|||||||||||||| ||| || ||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | || |||||||||| ||||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |||||||||| |||||||||||||| |||</Hsp_midline> </Hsp> <Hsp> <Hsp_num>2</Hsp_num> <Hsp_bit-score>331.671</Hsp_bit-score> <Hsp_score>179</Hsp_score> <Hsp_evalue>2.94161e-93</Hsp_evalue> <Hsp_query-from>3127</Hsp_query-from> <Hsp_query-to>3368</Hsp_query-to> <Hsp_hit-from>782</Hsp_hit-from> <Hsp_hit-to>1023</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>222</Hsp_identity> <Hsp_positive>222</Hsp_positive> <Hsp_gaps>2</Hsp_gaps> <Hsp_align-len>243</Hsp_align-len> <Hsp_qseq>AGGCAGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAGGTCACCCGTATGGTCATCATCATGGTCATTGCTTTCCTAATCTGTTGGCTGCCGTATGCCGGCGTGGCATTCTACATCTTCACCCACCAGGGCTCTAACTTTGGCCCCATCTTCATGACCCTCCCGGCATTCTTTGCCAAG-TCGTCCTCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAG</Hsp_qseq> <Hsp_hseq>AGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCG-CCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAG</Hsp_hseq> <Hsp_midline>|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| |||| || ||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |||| || |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||</Hsp_midline> </Hsp> <Hsp> <Hsp_num>3</Hsp_num> <Hsp_bit-score>265.191</Hsp_bit-score> <Hsp_score>143</Hsp_score> <Hsp_evalue>3.02604e-73</Hsp_evalue> <Hsp_query-from>1410</Hsp_query-from> <Hsp_query-to>1582</Hsp_query-to> <Hsp_hit-from>448</Hsp_hit-from> <Hsp_hit-to>620</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>163</Hsp_identity> <Hsp_positive>163</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>173</Hsp_align-len> <Hsp_qseq>GGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTATGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCCTTGCCCTCACCTGGGTCATGGCACTGGCCTGCGCCGCGCCCCCGCTAGTCGGCTGGTCCAGGTA</Hsp_qseq> <Hsp_hseq>GGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTA</Hsp_hseq> <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||| || | |||||||||||||||</Hsp_midline> </Hsp> <Hsp> <Hsp_num>4</Hsp_num> <Hsp_bit-score>248.571</Hsp_bit-score> <Hsp_score>134</Hsp_score> <Hsp_evalue>3.04752e-68</Hsp_evalue> <Hsp_query-from>2854</Hsp_query-from> <Hsp_query-to>3023</Hsp_query-to> <Hsp_hit-from>615</Hsp_hit-from> <Hsp_hit-to>784</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>158</Hsp_identity> <Hsp_positive>158</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>170</Hsp_align-len> <Hsp_qseq>CAGGTACATCCCAGAGGGCATGCAGTGCTCATGTGGAATCGACTACTACACCCTCAAGCCGGAGGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCTATGATTGTCATATTCTTTTGCTATGGACAGCTGGTCTTCACCGTCAAGGAGG</Hsp_qseq> <Hsp_hseq>CAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGG</Hsp_hseq> <Hsp_midline>|||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| || || |||||||| ||||| |||||||||||||||||||</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>16</Statistics_hsp-len> <Statistics_eff-space>20482300</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>10</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> <Iteration_query-len>983</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4628008</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>11</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> <Iteration_query-len>983</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4628008</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>12</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> <Iteration_query-len>983</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_3</Hit_id> <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> <Hit_accession>Subject_3</Hit_accession> <Hit_len>1213</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>1323.32</Hsp_bit-score> <Hsp_score>716</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>959</Hsp_query-to> <Hsp_hit-from>118</Hsp_hit-from> <Hsp_hit-to>1076</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>878</Hsp_identity> <Hsp_positive>878</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>959</Hsp_align-len> <Hsp_qseq>GTGCCCTTCTCCAACAAGACGGGTGTGGTGCGCAGCCCCTTCGAGTACCCGCAGTACTACCTGGCTGAGCCCTGGCAGTTCTCCATGCTGGCTGCCTACATGTTTCTGCTGATCGTGCTCGGATTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCTGTGGCCAACCTCTTCATGGTCTTTGGAGGCTTCACCACCACCCTGTATACCTCTATGCATGGATACTTCGTCTTCGGGGCCACGGGATGCAATCTGGAGGGCTTCTTTGCCACGCTGGGCGGTGAAATCGCCCTGTGGTCCCTGGTGGTCCTGGCCATCGAGCGGTATGTGGTGGTCTGCAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCACGCCATCATGGGCCTCGCCTTCACGTGGGTCATGGCACTGGCCTGCGCTGCACCCCCACTAGCCGGCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGCTCGTGTGGGATTGACTACTACACGCTCAAACCGGAGGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTGTCATTTTCTTCTGCTACGGACAGCTGGTGTTCACAGTGAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAAGTCACGCGCATGGTCATCATCATGGTCGTTGCGTTCCTAATCTGTTGGCTGCCCTACGCCAGCGTGGCATTCTACATCTTTACCCACCAGGGCTCTAACTTTGGCCCTGTCTTCATGACCATCCCGGCATTCTTCGCCAAGTCATCCTCCATCTACAACCCGGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCCTCTGCTGTGGCAAGAACCCACTGGGTGA</Hsp_qseq> <Hsp_hseq>GTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGA</Hsp_hseq> <Hsp_midline>|||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| | || |||||||||| |||||| || |||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| || ||||| || ||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||| | || ||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||||||| || ||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4628008</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>13</Iteration_iter-num> <Iteration_query-ID>Query_5</Iteration_query-ID> <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4933992</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>14</Iteration_iter-num> <Iteration_query-ID>Query_5</Iteration_query-ID> <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4933992</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>15</Iteration_iter-num> <Iteration_query-ID>Query_5</Iteration_query-ID> <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> <Iteration_query-len>1047</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_3</Hit_id> <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> <Hit_accession>Subject_3</Hit_accession> <Hit_len>1213</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>1208.83</Hsp_bit-score> <Hsp_score>654</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>1047</Hsp_query-to> <Hsp_hit-from>88</Hsp_hit-from> <Hsp_hit-to>1134</Hsp_hit-to> <Hsp_query-frame>1</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>917</Hsp_identity> <Hsp_positive>917</Hsp_positive> <Hsp_gaps>2</Hsp_gaps> <Hsp_align-len>1048</Hsp_align-len> <Hsp_qseq>ATGAACGGGACCGAGGGCCCAAACTTCTACGTGCCTTTCTCCAACAAGACGGGCGTCGTACGCAGCCCCTTCGAGGCGCCGCAGTACTACCTGGCTGAGCCATGGCAGTTCAGCATGCTGGCCGCCTACATGTTCCTGCTGATCATGCTTGGCTTCCCCATCAACTTCCTCACGCTGTACGTCACAGTCCAGCACAAGAAGCTGAGGACCCCCCTCAACTACATCCTGCTCAACCTGGCCGTGGCAGATCTCTTCATGGTGTTCGGGGGCTTCACCACCACCCTGTATACCTCTCTGCACGGGTACTTCGTGTTCGGTCCGACGGGCTGCAACCTCGAGGGCTTCTTTGCCACCTTAGGCGGTGAAATTGCACTGTGGTCCTTGGTGGTGCTAGCCATCGAGCGGTACGTAGTGGTGTGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCGTCGCATTCACCTGGGTCATGGCTCTGGCCTGTGCGGCCCCCCCCCTCGTCGGCTGGTCTAGATACATCCCGGAGGGGATGCAGTGCTCGTGCGGGATCGATTACTACACGCCCCACGAGGAGACCAACAATGAGTCGTTCGTCATCTACATGTTCGTTGTACACTTCATCATCCCCCTGATTGTCATATTCTTCTGCTACGGGCAGCTGGTCTTCACCGTCAAGGAGGCTGCAGCCCAGCAGCAGGAGTCGGCCACCACTCAGAAGGCCGAGAAGGAGGTCACGCGTATGGTCATCATCATGGTCATCGCTTTCCTCATATGCTGGCTGCCCTACGCAGGTGTGGCGTTCTACATCTTCACCCATCAGGGATCCGACTTTGGCCCCATCTTCATGACCATCCCGGCTTTCTTTGCCAAGA-CGTCTGCCGTCTATAACCCCGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGGTCACCACTCTCTGCTGTGGCAAGAACCCCCTAGGTGACGACGAGGCCTCCACGACCGTGTCCAAGACAGAGACCAGCCAAGTGGCCCCTGCCTAA</Hsp_qseq> <Hsp_hseq>ATGAATGGCACAGAAGGCCCTAACTTCTACGTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCC-GCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGATGAGGCCTCTGCTACCGTGTCCAAGACGGAGACGAGCCAGGTGGCCCCGGCCTAA</Hsp_hseq> <Hsp_midline>||||| || || || ||||| |||||||||||||| |||||||| |||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || || ||||||||||||||||||||||| |||||||| || ||||||||||| | || |||||||||| |||||| || ||||||||||| || |||||||| ||||| || || || ||||| | |||||||||||||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| || || ||||| |||| ||||||||| || |||||||| ||||| ||||||||||||| || ||||| |||||||||| | | |||| |||||| ||||| || ||||||||||||||||| || ||||||| ||||||| ||||| |||| || |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || |||||| |||||||||| | ||||| ||||||||||||||||| ||||| ||| |||| || |||||||||||||||||||| || ||||||||||||| || | ||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| || |||||||| |||||||| | |||||||||||||| ||||| ||||| |||||||| ||||||</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>4933992</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>16</Iteration_iter-num> <Iteration_query-ID>Query_6</Iteration_query-ID> <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> <Iteration_query-len>1344</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>6353949</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>17</Iteration_iter-num> <Iteration_query-ID>Query_6</Iteration_query-ID> <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> <Iteration_query-len>1344</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>6353949</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>18</Iteration_iter-num> <Iteration_query-ID>Query_6</Iteration_query-ID> <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> <Iteration_query-len>1344</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>15</Statistics_hsp-len> <Statistics_eff-space>6353949</Statistics_eff-space> <Statistics_kappa>0.46</Statistics_kappa> <Statistics_lambda>1.28</Statistics_lambda> <Statistics_entropy>0.85</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> </BlastOutput_iterations> </BlastOutput>