ncbi_blast_plus: revision graph

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Fix for get_species_taxids draft
15 months ago, by peterjc
Update for NCBI BLAST+ 2.14.1 draft
16 months ago, by peterjc
Update with window size fix draft
2022-06-07, by peterjc
"2.10.1+galaxy1 with taxid improvements" draft
2022-03-29, by peterjc
"Updated to 2.10.1+galaxy0" draft
2020-09-10, by peterjc
"Updated to 2.9.0+galaxy0" draft
2020-09-10, by peterjc
"planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 3f9f39ad808325a11d9967980d2cb82c96d69324" draft
2020-09-09, by peterjc
v0.3.3 - fixed legacy dependecy definition draft
2019-07-20, by peterjc
v0.3.1 completed gzip support draft
2018-10-23, by peterjc
Fixed tool_dependencies.xml draft
2018-07-09, by peterjc
v0.3.0 Updated for NCBI BLAST+ 2.7.1 draft
2018-06-30, by peterjc
v0.2.01 add -max_hsps, -use_sw_tback; lists args; internal updates draft
2017-09-18, by peterjc
v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml draft
2017-04-19, by peterjc
Uploaded v0.1.08, can search multiple local databases, fixes a pipe problem in blastdbcmd, and minor internal changes. draft
2016-11-07, by peterjc
v0.1.07 - fix macro problem in blastxml_to_tabular.xml, reenable .loc tests draft
2015-11-19, by peterjc
v0.1.06, now using BLAST+ 2.2.31 draft
2015-09-07, by peterjc
v0.1.05 - Update citation information now GigaScience paper is out draft
2015-09-04, by peterjc
Uploaded v0.1.04, fix regression with BLAST database from history draft
2015-07-22, by peterjc
Uploaded v0.1.03 (internal changes); v0.1.02 (BLAST+ 2.2.30 etc) draft
2015-07-05, by peterjc
Uploaded v0.1.01 - Requires blastdbd datatype (blast_datatypes v0.0.19). Support for makeprofiledb to create protein domain databases and use them in RPS-BLAST and RPS-TBLASTN. Tools now support GI and SeqID filters, and embed the citations. draft
2014-12-01, by peterjc
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields. draft
2014-03-14, by peterjc
Re-uploaded v0.0.22, in order to update the blast_datatypes dependency draft
2014-01-21, by peterjc
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. draft
2013-12-05, by peterjc
Uploaded v0.0.20, handles dependencies via package_blast_plus_2_2_26, development moved to GitHub, RST README, MIT licence, citation information, more tests, percentage identity option to BLASTN, cElementTree to ElementTree fallback. draft
2013-09-23, by peterjc
Uploaded v0.0.19, adds wrappers for rpsblast and rpstblastn with new blastdb_d.loc file for their protein domain database. draft
2013-04-25, by peterjc
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns. draft
2013-02-19, by peterjc
Uploaded v0.0.16, declares explicit dependency on the 'blast_datatypes' repository. draft
2013-02-08, by peterjc
Uploaded v0.0.15, clearer warning about searching against a FASTA file. draft
2013-01-24, by peterjc
Uploaded v0.0.14 adding local BLAST database support. draft
2012-11-09, by peterjc
Uploaded v0.0.13 which uses the recently added error handling. No longer bundles the hide_stderr.py script which is now redundant. draft
2012-09-19, by peterjc
Uploaded v0.0.12b, same code but moving folders around to match all my other tools and make future development simpler. draft
2012-08-23, by peterjc
Uploaded v0.0.12 again, without extra path draft
2012-08-23, by peterjc
Uploaded v0.0.12 of the NCBI BLAST+ wrappers. draft
2012-08-23, by peterjc
Uploaded draft
2012-08-17, by devteam

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