Mercurial > repos > devteam > package_bowtie2_2_1_0

comparison tool_dependencies.xml @ 0:017a00c265f1 draft default tip

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Imported from capsule None
author devteam
date Mon, 27 Jan 2014 09:25:09 -0500
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-1:000000000000 0:017a00c265f1
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="bowtie2" version="2.1.0">
4 <install version="1.0">
5 <actions_group>
6 <actions os="linux" architecture="x86_64">
7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bowtie2/bowtie2-2.1.0-linux-x86_64.tgz</action>
8 <action type="move_directory_files">
9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action>
12 </actions>
13 <actions os="darwin" architecture="x86_64">
14 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/bowtie2/bowtie2-2.1.0-macos-x86_64.tgz</action>
15 <action type="move_directory_files">
16 <source_directory>.</source_directory>
17 <destination_directory>$INSTALL_DIR</destination_directory>
18 </action>
19 </actions>
20 <actions os="linux" architecture="i386">
21 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/bowtie2/bowtie2-2.1.0-linux-i386.tgz</action>
22 <action type="move_directory_files">
23 <source_directory>.</source_directory>
24 <destination_directory>$INSTALL_DIR</destination_directory>
25 </action>
26 </actions>
27 <actions os="darwin" architecture="i386">
28 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/i386/bowtie2/bowtie2-2.1.0-macos-i386.tgz</action>
29 <action type="move_directory_files">
30 <source_directory>.</source_directory>
31 <destination_directory>$INSTALL_DIR</destination_directory>
32 </action>
33 </actions>
34 <actions>
35 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.1.0/bowtie2-2.1.0-source.zip</action>
36 <action type="shell_command">make</action>
37 <action type="move_file">
38 <source>bowtie2</source>
39 <destination>$INSTALL_DIR</destination>
40 </action>
41 <action type="move_file">
42 <source>bowtie2-align</source>
43 <destination>$INSTALL_DIR</destination>
44 </action>
45 <action type="move_file">
46 <source>bowtie2-build</source>
47 <destination>$INSTALL_DIR</destination>
48 </action>
49 <action type="move_file">
50 <source>bowtie2-inspect</source>
51 <destination>$INSTALL_DIR</destination>
52 </action>
53 </actions>
54 <action type="set_environment">
55 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
56 </action>
57 </actions_group>
58 </install>
59 <readme></readme>
60 </package>
61 </tool_dependency>