Mercurial > repos > devteam > package_bowtie_0_12_7

view tool_dependencies.xml @ 1:9f9f38617a98 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author devteam
date Mon, 10 Feb 2014 13:12:53 -0500
parents 028d22e7b70f
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie" version="0.12.7">
        <install version="1.0">
            <actions_group>
                <actions os="linux" architecture="x86_64">
                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bowtie/bowtie-0.12.7-linux-x86_64.tgz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <actions os="darwin" architecture="x86_64">
                    <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/bowtie/bowtie-0.12.7-macos-10.5-x86_64.tgz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <actions os="linux" architecture="i386">
                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/bowtie/bowtie-0.12.7-linux-i386.tgz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <actions os="darwin" architecture="i386">
                    <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/i386/bowtie/bowtie-0.12.7-macos-10.5-i386.tgz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <actions>
                    <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip</action>
                    <action type="shell_command">make</action>
                    <action type="move_file">
                        <source>bowtie</source>
                        <destination>$INSTALL_DIR</destination>
                    </action>
                    <action type="move_file">
                        <source>bowtie-build</source>
                        <destination>$INSTALL_DIR</destination>
                    </action>
                    <action type="move_file">
                        <source>bowtie-inspect</source>
                        <destination>$INSTALL_DIR</destination>
                    </action>
                </actions>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme></readme>
    </package>
</tool_dependency>