Mercurial > repos > devteam > package_gatk_1_4
comparison tool_dependencies.xml @ 0:ec95ec570854 draft default tip
Imported from capsule None
| author | devteam |
|---|---|
| date | Tue, 01 Apr 2014 10:47:59 -0400 |
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| children |
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| -1:000000000000 | 0:ec95ec570854 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="gatk" version="1.4"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://depot.galaxyproject.org/package/noarch/gatk-1.4.tar.gz</action> | |
| 7 <action type="move_directory_files"> | |
| 8 <source_directory>.</source_directory> | |
| 9 <destination_directory>$INSTALL_DIR/jars</destination_directory> | |
| 10 </action> | |
| 11 <action type="set_environment"> | |
| 12 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable> | |
| 13 </action> | |
| 14 </actions> | |
| 15 </install> | |
| 16 <readme> | |
| 17 Copyright (c) 2011 The Broad Institute | |
| 18 | |
| 19 Permission is hereby granted, free of charge, to any person | |
| 20 obtaining a copy of this software and associated documentation | |
| 21 files (the "Software"), to deal in the Software without | |
| 22 restriction, including without limitation the rights to use, | |
| 23 copy, modify, merge, publish, distribute, sublicense, and/or sell | |
| 24 copies of the Software, and to permit persons to whom the | |
| 25 Software is furnished to do so, subject to the following | |
| 26 conditions: | |
| 27 | |
| 28 The above copyright notice and this permission notice shall be | |
| 29 included in all copies or substantial portions of the Software. | |
| 30 | |
| 31 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, | |
| 32 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES | |
| 33 OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND | |
| 34 NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT | |
| 35 HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, | |
| 36 WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING | |
| 37 FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR | |
| 38 THE USE OR OTHER DEALINGS IN THE SOFTWARE. | |
| 39 </readme> | |
| 40 </package> | |
| 41 </tool_dependency> |