Mercurial > repos > devteam > package_picard_122

comparison tool_dependencies.xml @ 1:53eab8b10cfc draft default tip

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author devteam
date Thu, 23 Oct 2014 11:17:33 -0400
parents 8ddbb5092d8a
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0:8ddbb5092d8a 1:53eab8b10cfc
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="picard" version="1.122"> 3 <package name="picard" version="1.122.0">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions_group> 5 <actions_group>
6 <actions architecture="x86_64" os="linux"> 6 <actions architecture="x86_64" os="linux">
7 <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.122/picard-tools-1.122.zip</action> 7 <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.122/picard-tools-1.122.zip</action>
8 <action type="move_directory_files"> 8 <action type="move_directory_files">
9 <source_directory>.</source_directory> 9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory> 10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action> 11 </action>
12 </actions> 12 </actions>
13 <action type="set_environment"> 13 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/picard-tools-1.122</environment_variable> 14 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
15 </action> 15 </action>
16 </actions_group> 16 </actions_group>
17 </install> 17 </install>
18 <readme> 18 <readme>
19 This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases 19 This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases