Mercurial > repos > devteam > package_picard_1_56_0

comparison tool_dependencies.xml @ 2:99a28567c3a3 draft default tip

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Uploaded correct tool dependency definition.
author devteam
date Tue, 11 Nov 2014 15:19:25 -0500
parents 4a49481f29e7
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1:4a49481f29e7 2:99a28567c3a3
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="picard" version="1.122.0"> 3 <package name="picard" version="1.56.0">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions_group> 5 <actions>
6 <actions architecture="x86_64" os="linux"> 6 <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action>
7 <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.122/picard-tools-1.122.zip</action> 7 <action type="move_directory_files">
8 <action type="move_directory_files"> 8 <source_directory>picard-tools-1.56</source_directory>
9 <source_directory>.</source_directory> 9 <destination_directory>$INSTALL_DIR/jars</destination_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory> 10 </action>
11 </action>
12 </actions>
13 <action type="set_environment"> 11 <action type="set_environment">
14 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> 12 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
15 </action> 13 </action>
16 </actions_group> 14 </actions>
17 </install> 15 </install>
18 <readme> 16 <readme>
19 This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases
20 </readme> 17 </readme>
21 </package> 18 </package>
22 </tool_dependency> 19 </tool_dependency>