# HG changeset patch
# User devteam
# Date 1385317512 18000
# Node ID 61f9ddecde82b7f499a10c4c24bba87b15e4dfb5

Uploaded

diff -r 000000000000 -r 61f9ddecde82 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sun Nov 24 13:25:12 2013 -0500
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vcftools" version="0.1.11">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.11.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action>
+                <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. -->
+                <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project
+        </readme>
+    </package>
+</tool_dependency>
\ No newline at end of file