diff test-data/pgSnp2snp_output.txt @ 0:d281062566f9 draft

Imported from capsule None
author devteam
date Mon, 28 Jul 2014 11:55:36 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/pgSnp2snp_output.txt	Mon Jul 28 11:55:36 2014 -0400
@@ -0,0 +1,10002 @@
+#{"column_names":["chr","pos","A","B","Q","1A","1B","1G","1Q"],
+#"individuals":[["na",6]],
+#"dbkey":"hg19","pos":2,"rPos":2,"ref":1,"scaffold":1,"species":"hg19"}
+chr1	1888681	T	C	-1	3	4	1	0.8893
+chr1	3118325	C	T	-1	0	8	0	0.8796
+chr1	3211457	A	C	-1	17	10	1	0.8576
+chr1	3222692	G	A	-1	10	14	1	0.8694
+chr1	3281273	G	A	-1	5	4	1	0.8210
+chr1	3630475	C	T	-1	12	12	1	0.8430
+chr1	4599834	C	T	-1	0	18	0	0.8797
+chr1	5287107	T	G	-1	0	6	0	0.8443
+chr1	5307765	C	T	-1	22	12	1	0.8505
+chr1	5341621	A	C	-1	5	3	1	0.9001
+chr1	5478586	A	G	-1	0	11	0	0.8997
+chr1	5680961	A	C	-1	16	10	1	0.8135
+chr1	5736051	G	A	-1	34	57	1	0.8655
+chr1	5831207	C	T	-1	5	10	1	0.8575
+chr1	6200884	A	C	-1	0	13	0	0.8346
+chr1	6307254	T	C	-1	0	11	0	0.8723
+chr1	6621228	G	T	-1	10	11	1	0.8336
+chr1	7094424	G	A	-1	0	4	0	0.8578
+chr1	7392593	C	T	-1	15	25	1	0.8644
+chr1	7500089	C	G	-1	0	13	0	0.8508
+chr1	7911301	C	T	-1	8	9	1	0.8736
+chr1	7954646	C	T	-1	12	8	1	0.8490
+chr1	8027386	C	T	-1	15	21	1	0.8528
+chr1	8549302	C	T	-1	8	7	1	0.8633
+chr1	8932179	G	T	-1	13	12	1	0.8594
+chr1	9016389	C	T	-1	0	14	0	0.8590
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+chr1	10615774	T	C	-1	0	15	0	0.8684
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+chr1	12238146	G	A	-1	9	4	1	0.8560
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+chr1	13189040	A	T	-1	8	4	1	0.8868
+chr1	14208570	G	A	-1	8	10	1	0.8646
+chr1	14501554	G	A	-1	26	17	1	0.8646
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+chr1	15441925	C	T	-1	0	17	0	0.8402
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+chr1	54161544	T	C	-1	14	19	1	0.8679
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+chr1	55685343	A	G	-1	6	11	1	0.8461
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+chr1	56546506	C	A	-1	0	6	0	0.9083
+chr1	56974090	G	A	-1	17	14	1	0.8663
+chr1	56996560	A	G	-1	6	4	1	0.6416
+chr1	57302084	T	A	-1	13	8	1	0.8970
+chr1	57627202	A	G	-1	15	13	1	0.8401
+chr1	57660004	T	C	-1	12	14	1	0.8124
+chr1	57865802	G	A	-1	15	23	1	0.8628
+chr1	58211741	C	T	-1	18	12	1	0.8365
+chr1	58292673	C	T	-1	16	11	1	0.8593
+chr1	58340138	C	T	-1	30	14	1	0.7891
+chr1	58428662	C	T	-1	10	11	1	0.8743
+chr1	58465711	A	C	-1	9	5	1	0.9154
+chr1	59120562	A	G	-1	0	3	0	0.8655
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+chr1	60550176	T	A	-1	6	13	1	0.7964
+chr1	61593803	G	A	-1	0	6	0	0.8694
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+chr1	62074485	A	G	-1	18	18	1	0.8548
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+chr1	62471633	A	G	-1	9	9	1	0.8671
+chr1	62691519	G	A	-1	8	9	1	0.8581
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+chr1	62868350	C	T	-1	18	12	1	0.8511
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+chr1	63477653	T	C	-1	0	29	0	0.8564
+chr1	63963102	T	C	-1	16	21	1	0.8460
+chr1	64188254	C	T	-1	17	9	1	0.8148
+chr1	64284052	A	G	-1	7	7	1	0.8011
+chr1	64420061	G	A	-1	21	15	1	0.8546
+chr1	64717163	C	G	-1	19	12	1	0.8709
+chr1	64765770	T	C	-1	18	9	1	0.8373
+chr1	64800455	C	T	-1	17	6	1	0.8115
+chr1	65042589	G	T	-1	5	3	1	0.8156
+chr1	65103740	T	C	-1	19	14	1	0.8434
+chr1	65711525	T	A	-1	23	11	1	0.8326
+chr1	66705718	A	G	-1	14	11	1	0.8847
+chr1	66946305	G	C	-1	0	37	0	0.8304
+chr1	67002116	T	C	-1	0	15	0	0.8375
+chr1	67094335	G	A	-1	0	30	0	0.8477
+chr1	67860626	A	G	-1	16	12	1	0.8525
+chr1	68048718	A	G	-1	13	14	1	0.8531
+chr1	68358176	C	T	-1	12	18	1	0.8600
+chr1	69748509	A	G	-1	21	12	1	0.8674
+chr1	69841275	G	T	-1	9	6	1	0.8747
+chr1	70269052	T	A	-1	18	16	1	0.8552
+chr1	71084849	A	G	-1	10	6	1	0.8905
+chr1	71107799	A	G	-1	10	16	1	0.8827
+chr1	72402879	G	A	-1	12	13	1	0.8149
+chr1	72998810	C	T	-1	6	6	1	0.8567
+chr1	73025215	G	A	-1	0	19	0	0.8334
+chr1	73742617	T	G	-1	5	11	1	0.8673
+chr1	73799967	G	T	-1	12	15	1	0.8359
+chr1	74010720	T	G	-1	4	3	1	0.7179
+chr1	74572350	C	T	-1	0	27	0	0.8473
+chr1	74699911	G	A	-1	0	8	0	0.8535
+chr1	75638881	T	C	-1	20	9	1	0.8840
+chr1	75969123	C	T	-1	9	10	1	0.8483
+chr1	76356647	G	A	-1	0	10	0	0.8293
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+chr1	77361666	T	A	-1	0	2	0	0.9443
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