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5
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1 ## htsjdk.samtools.metrics.StringHeader
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2 # picard.analysis.CollectInsertSizeMetrics HISTOGRAM_FILE=/Users/anton/galaxy-central/database/files/000/dataset_699.dat DEVIATIONS=10.0 HISTOGRAM_WIDTH=500 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_698.dat REFERENCE_SEQUENCE=/Users/anton/temp/mt.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
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3 ## htsjdk.samtools.metrics.StringHeader
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4 # Started on: Sat Oct 04 10:14:44 EDT 2014
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5
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6 ## METRICS CLASS picard.analysis.InsertSizeMetrics
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7 MEDIAN_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP
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8 200 28 112 251 193.969697 36.171207 99 FR 7 15 33 43 57 73 83 99 125 177
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9
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10 ## HISTOGRAM java.lang.Integer
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11 insert_size All_Reads.fr_count
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12 112 1
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13 120 1
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14 132 2
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15 134 2
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16 138 5
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17 139 1
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18 140 1
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19 141 1
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20 151 2
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21 156 4
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22 157 1
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23 159 1
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24 161 2
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25 169 1
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26 172 1
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27 173 1
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28 177 3
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29 179 3
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30 182 3
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31 184 4
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32 185 2
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33 187 1
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34 192 1
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35 193 1
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36 194 3
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37 200 2
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38 201 5
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39 203 8
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40 205 1
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41 208 1
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42 213 4
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43 216 1
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44 222 1
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45 228 5
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46 229 2
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47 230 1
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48 231 3
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49 233 1
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50 236 2
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51 238 2
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52 241 4
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53 242 3
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54 250 2
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55 251 3
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56
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