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1 ## htsjdk.samtools.metrics.StringHeader
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2 # picard.analysis.MeanQualityByCycle CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_924.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INPUT=/Users/anton/galaxy-central/database/files/000/dataset_882.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_923.dat REFERENCE_SEQUENCE=localref.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
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3 ## htsjdk.samtools.metrics.StringHeader
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4 # Started on: Mon Oct 13 16:54:21 EDT 2014
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5
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6
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7 ## HISTOGRAM java.lang.Integer
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8 CYCLE MEAN_QUALITY
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9 1 30.92
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10 2 32.06
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11 3 31.93
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12 4 32.2
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13 5 32.11
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14 6 35.73
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15 7 35.77
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16 8 35.93
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17 9 34.98
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18 10 35.63
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19 11 35.38
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20 12 36.14
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21 13 37.72
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22 14 37.39
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23 15 37.27
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24 16 37.29
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25 17 37.21
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26 18 37.13
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27 19 37.28
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28 20 36.9
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29 21 37.12
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30 22 36.77
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31 23 37.81
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32 24 37.64
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33 25 38.32
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34 26 38.15
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35 27 37.97
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36 28 37.8
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37 29 37.86
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38 30 37.85
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39 31 38.21
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40 32 38.36
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41 33 38.24
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42 34 38.2
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43 35 38.04
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44 36 37.52
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45 37 37.68
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46 38 38.12
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47 39 37.46
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48 40 37.66
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49 41 37.23
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50 42 37.25
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51 43 37.28
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52 44 37.61
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53 45 37.49
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54 46 37.67
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55 47 38.02
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56 48 37.43
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57 49 37.91
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58 50 38.02
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59 51 38.01
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60 52 37.97
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61 53 37.53
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62 54 37.46
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63 55 37.83
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64 56 37.38
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65 57 37.54
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66 58 37.39
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67 59 37.69
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68 60 37.99
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69 61 37.65
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70 62 37.19
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71 63 38.03
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72 64 37.54
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73 65 38.06
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74 66 37.6
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75 67 37.17
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76 68 37.91
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77 69 37.51
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78 70 37.97
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79 71 37.78
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80 72 37.88
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81 73 37.54
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82 74 36.84
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83 75 37.3
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84 76 37.89
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85 77 37.64
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86 78 37.54
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87 79 37.73
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88 80 37.23
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89 81 36.97
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90 82 37.45
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91 83 36.68
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92 84 36.87
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93 85 36.82
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94 86 37.47
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95 87 37.18
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96 88 37.42
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97 89 37.4
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98 90 36.42
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99 91 37.12
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100 92 37.63
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101 93 37.37
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102 94 37.38
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103 95 37.55
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104 96 37.84
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105 97 38.14
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106 98 37.42
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107 99 38.12
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108 100 36.51
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109 101 36.54
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110 102 37.02
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111 103 36.53
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112 104 37.57
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113 105 37.4
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114 106 37.28
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115 107 37.32
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116 108 37.44
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117 109 37.4
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118 110 36.82
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119 111 37.73
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120 112 37.42
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121 113 37.53
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122 114 36.52
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123 115 36.44
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124 116 36.06
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125 117 37.45
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126 118 36.9
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127 119 36.53
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128 120 37.15
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129 121 36.28
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130 122 37.27
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131 123 37.05
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132 124 37.34
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133 125 35.58
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134 126 36.2
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135 127 36.72
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136 128 36.17
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137 129 36.99
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138 130 36.39
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139 131 37.17
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140 132 36.61
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141 133 36.34
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142 134 36.7
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143 135 36.18
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144 136 36.07
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145 137 37.15
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146 138 36.16
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147 139 35.52
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148 140 36.35
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149 141 36.77
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150 142 35.8
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151 143 36.47
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152 144 36.07
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153 145 36.32
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154 146 36.53
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155 147 36.16
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156 148 35.99
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157 149 35.58
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158 150 35.99
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159 151 35.37
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160 152 34.34
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161 153 34.51
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162 154 35.34
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163 155 35.83
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164 156 36.26
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165 157 36.28
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166 158 36.68
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167 159 36.18
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168 160 36.44
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169 161 35.34
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170 162 34.81
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171 163 35.58
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172 164 35.72
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173 165 35.63
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174 166 36.01
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175 167 35.22
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176 168 35.82
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177 169 35.29
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178 170 35
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179 171 35.46
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180 172 34.78
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181 173 34.54
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182 174 33.67
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183 175 34.51
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184 176 34.47
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185 177 35.38
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186 178 34.74
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187 179 35.6
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188 180 34.5
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189 181 34.27
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190 182 34.26
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191 183 35.11
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192 184 34.54
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193 185 33.99
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194 186 33.22
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195 187 33.8
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196 188 33.43
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197 189 34.4
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198 190 32.97
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199 191 33.59
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200 192 33.29
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201 193 32.52
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202 194 34.05
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203 195 33.54
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204 196 32.56
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205 197 33.88
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206 198 33.03
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207 199 32.74
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208 200 31.84
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209 201 33.09
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210 202 32.95
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211 203 32.85
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212 204 33.79
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213 205 33.35
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214 206 33.05
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215 207 32.71
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216 208 32.83
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217 209 32.76
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218 210 31.26
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219 211 31.29
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220 212 32.19
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221 213 33.79
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222 214 33.22
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223 215 32.27
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224 216 32.03
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225 217 31.8
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226 218 32.67
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227 219 32.57
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228 220 32.32
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229 221 31.24
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230 222 31.27
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231 223 31.22
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232 224 31.59
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233 225 30.77
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234 226 30.36
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235 227 30.66
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236 228 30.16
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237 229 30.91
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238 230 32.04
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239 231 32.24
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240 232 32.04
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241 233 30.92
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242 234 30.78
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243 235 31.59
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244 236 31.73
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245 237 32.32
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246 238 30.25
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247 239 29.03
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248 240 29.61
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249 241 30.03
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250 242 29.38
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251 243 28.82
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252 244 29.32
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253 245 28.41
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254 246 28.49
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255 247 29.24
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256 248 29.71
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257 249 29.51
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258 250 28.9
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259 251 20.13
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260 252 32.02
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261 253 33.03
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262 254 33.14
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263 255 33.32
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264 256 32.92
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265 257 35.86
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266 258 36.02
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267 259 35.97
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268 260 35.76
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269 261 36.03
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270 262 35.9
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271 263 36.35
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272 264 37.5
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273 265 37.28
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274 266 37.61
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275 267 37.7
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276 268 37.66
|
|
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277 269 37.48
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|
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278 270 37.68
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279 271 37.59
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280 272 37.66
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281 273 37.73
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282 274 38.05
|
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283 275 38.42
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284 276 38.12
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285 277 38.37
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286 278 38.41
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287 279 38.32
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288 280 38.39
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289 281 38.2
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|
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290 282 38.26
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|
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291 283 38.34
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|
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292 284 38.22
|
|
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293 285 38.37
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294 286 38.33
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|
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295 287 38.39
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296 288 38.17
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297 289 38.1
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|
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298 290 38.16
|
|
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299 291 37.86
|
|
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300 292 37.77
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301 293 38.23
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|
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302 294 37.79
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303 295 37.64
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304 296 38.02
|
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305 297 37.77
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306 298 38.2
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307 299 38.02
|
|
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308 300 37.83
|
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309 301 38.26
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|
310 302 38.2
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311 303 38.04
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312 304 37.86
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313 305 38.14
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314 306 38.25
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|
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315 307 37.88
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|
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316 308 38.39
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317 309 38.3
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318 310 37.82
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319 311 37.71
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320 312 38.23
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321 313 38.07
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322 314 38.06
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323 315 37.71
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|
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324 316 37.92
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|
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325 317 37.78
|
|
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326 318 37.89
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327 319 37.37
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328 320 37.2
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329 321 37.59
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|
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330 322 37.88
|
|
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331 323 37.35
|
|
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332 324 37.8
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333 325 37.11
|
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334 326 37.34
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335 327 36.97
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336 328 37.34
|
|
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337 329 37.27
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338 330 37.6
|
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339 331 37.4
|
|
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340 332 37.31
|
|
|
341 333 37.57
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|
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342 334 37.12
|
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343 335 37.46
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344 336 37.45
|
|
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345 337 37.47
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346 338 37.27
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347 339 37.62
|
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348 340 37.6
|
|
|
349 341 37.78
|
|
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350 342 37.51
|
|
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351 343 37.81
|
|
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352 344 37.92
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|
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353 345 37.86
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354 346 37.22
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355 347 37.75
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356 348 37.5
|
|
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357 349 37.12
|
|
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358 350 37.2
|
|
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359 351 36.71
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|
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360 352 37.26
|
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361 353 37.27
|
|
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362 354 37.96
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363 355 38
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|
|
364 356 37.49
|
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|
365 357 37.61
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366 358 36.68
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367 359 37.02
|
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368 360 37.23
|
|
|
369 361 36.35
|
|
|
370 362 36.78
|
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|
371 363 36.51
|
|
|
372 364 36.98
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|
373 365 36.74
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374 366 36.98
|
|
|
375 367 36.4
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|
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376 368 36.89
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|
377 369 37.09
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378 370 36.85
|
|
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379 371 36.94
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380 372 37.03
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381 373 37.27
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382 374 36.99
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383 375 37.22
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384 376 36.68
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385 377 37.01
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386 378 37.16
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|
|
387 379 36.63
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388 380 37.02
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389 381 36.7
|
|
|
390 382 37.36
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|
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391 383 36.97
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|
|
392 384 36.61
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|
393 385 36.4
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394 386 36.31
|
|
|
395 387 36.38
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|
|
396 388 36.57
|
|
|
397 389 36.17
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|
398 390 35.9
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|
|
399 391 36.52
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|
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400 392 36.31
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|
|
401 393 35.73
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|
402 394 35.6
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403 395 35.14
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|
|
404 396 35.58
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405 397 34.47
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|
406 398 36.4
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|
|
407 399 36.35
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|
|
408 400 35.78
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|
|
409 401 35.94
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|
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410 402 36.15
|
|
|
411 403 35.06
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|
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412 404 34.94
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|
|
413 405 35.2
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|
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414 406 35.3
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|
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415 407 35.66
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416 408 36.08
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417 409 35.26
|
|
|
418 410 35.19
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|
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419 411 35.12
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|
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420 412 34.92
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|
|
421 413 35.04
|
|
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422 414 34.72
|
|
|
423 415 35.31
|
|
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424 416 35.41
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|
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425 417 35.76
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|
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426 418 34.93
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|
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427 419 34.61
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|
|
428 420 31.67
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429 421 33.03
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430 422 34.43
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|
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431 423 33.21
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|
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432 424 34.64
|
|
|
433 425 34.09
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|
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434 426 33.68
|
|
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435 427 33.42
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|
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436 428 33.14
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437 429 34.06
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|
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438 430 33.51
|
|
|
439 431 33.3
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|
|
440 432 34.18
|
|
|
441 433 34.35
|
|
|
442 434 34.16
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|
|
443 435 34.4
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|
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444 436 33.83
|
|
|
445 437 32.62
|
|
|
446 438 32.52
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|
|
447 439 32.2
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|
|
448 440 31.23
|
|
|
449 441 30.53
|
|
|
450 442 31.09
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|
|
451 443 31.4
|
|
|
452 444 32.42
|
|
|
453 445 32.48
|
|
|
454 446 32.09
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|
|
455 447 32.82
|
|
|
456 448 32.44
|
|
|
457 449 31.59
|
|
|
458 450 31.29
|
|
|
459 451 31.51
|
|
|
460 452 31.44
|
|
|
461 453 29.73
|
|
|
462 454 30.59
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|
|
463 455 31.49
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|
|
464 456 29.87
|
|
|
465 457 30.48
|
|
|
466 458 30.45
|
|
|
467 459 31.44
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|
|
468 460 29.87
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|
|
469 461 30.61
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|
|
470 462 30.39
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|
|
471 463 30.65
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|
|
472 464 28.86
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|
|
473 465 28.55
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|
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474 466 28.77
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|
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475 467 30
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|
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476 468 30.1
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|
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477 469 30.27
|
|
|
478 470 31.21
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|
|
479 471 30.62
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|
|
480 472 31.14
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|
|
481 473 29.87
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|
|
482 474 28.56
|
|
|
483 475 28.48
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|
|
484 476 29.52
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|
|
485 477 28.14
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|
|
486 478 28.27
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|
|
487 479 28.02
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|
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488 480 28.57
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|
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489 481 27.39
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|
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490 482 28.5
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|
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491 483 28.68
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|
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492 484 27.18
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|
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493 485 27.42
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|
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494 486 27.09
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495 487 25.93
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496 488 27.18
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|
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497 489 26.68
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498 490 26.65
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499 491 26.27
|
|
|
500 492 25.41
|
|
|
501 493 25.3
|
|
|
502 494 26.21
|
|
|
503 495 26.68
|
|
|
504 496 26.32
|
|
|
505 497 25.83
|
|
|
506 498 24.29
|
|
|
507 499 24.26
|
|
|
508 500 24.58
|
|
|
509 501 24.86
|
|
|
510 502 19.15
|
|
|
511
|
