Mercurial > repos > devteam > picard
annotate test-data/picard_QualityScoreDistribution_test1.tab @ 25:7d34178f2812 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit a0fcbda330469051d130fd0802c55960ae948e3b
| author | iuc |
|---|---|
| date | Tue, 11 Jun 2019 02:36:54 -0400 |
| parents | 5053a18d9bc8 |
| children | 3f254c5ced1d |
| rev | line source |
|---|---|
| 5 | 1 ## htsjdk.samtools.metrics.StringHeader |
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19
5053a18d9bc8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
iuc
parents:
5
diff
changeset
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2 # QualityScoreDistribution CHART_OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_85.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INCLUDE_NO_CALLS=false INPUT=picard_QualityScoreDistribution_bam OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_84.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false |
| 5 | 3 ## htsjdk.samtools.metrics.StringHeader |
|
19
5053a18d9bc8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
iuc
parents:
5
diff
changeset
|
4 # Started on: Sat Apr 14 09:35:07 CEST 2018 |
| 5 | 5 |
| 6 | |
| 7 ## HISTOGRAM java.lang.Byte | |
| 8 QUALITY COUNT_OF_Q | |
| 9 6 704 | |
| 10 7 2044 | |
| 11 8 745 | |
| 12 9 2761 | |
| 13 10 1193 | |
| 14 11 723 | |
| 15 12 1766 | |
| 16 13 1467 | |
| 17 14 1400 | |
| 18 15 1463 | |
| 19 16 478 | |
| 20 17 831 | |
| 21 18 330 | |
| 22 19 904 | |
| 23 20 1538 | |
| 24 21 2953 | |
| 25 22 565 | |
| 26 23 4270 | |
| 27 24 1496 | |
| 28 25 5178 | |
| 29 26 3992 | |
| 30 27 3779 | |
| 31 28 3074 | |
| 32 29 2909 | |
| 33 30 19446 | |
| 34 31 3520 | |
| 35 32 13368 | |
| 36 33 9203 | |
| 37 34 22271 | |
| 38 35 24655 | |
| 39 36 64306 | |
| 40 37 38212 | |
| 41 38 95777 | |
| 42 39 67370 | |
| 43 40 36926 | |
| 44 |