|
0
|
1 ## net.sf.picard.metrics.StringHeader
|
|
|
2 # net.sf.picard.sam.MarkDuplicates INPUT=picard_input_tiny_coord.bam OUTPUT=picard_MD_output2.bam METRICS_FILE=picard_MD_output1.txt REMOVE_DUPLICATES=false ASSUME_SORTED=true READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VALIDATION_STRINGENCY=LENIENT MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 TMP_DIR=/tmp/kpvincent VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
|
|
|
3 ## net.sf.picard.metrics.StringHeader
|
|
|
4 # Started on: Tue Apr 19 15:28:21 EDT 2011
|
|
|
5
|
|
|
6 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics
|
|
|
7 LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE
|
|
|
8 1 3 1 1 1 0 0.428571 3
|
|
|
9
|
|
|
10 ## HISTOGRAM java.lang.Double
|
|
|
11 BIN VALUE
|
|
|
12 1.0 0.948181
|
|
|
13 2.0 1.296997
|
|
|
14 3.0 1.425319
|
|
|
15 4.0 1.472527
|
|
|
16 5.0 1.489893
|
|
|
17 6.0 1.496282
|
|
|
18 7.0 1.498632
|
|
|
19 8.0 1.499497
|
|
|
20 9.0 1.499815
|
|
|
21 10.0 1.499932
|
|
|
22 11.0 1.499975
|
|
|
23 12.0 1.499991
|
|
|
24 13.0 1.499997
|
|
|
25 14.0 1.499999
|
|
|
26 15.0 1.5
|
|
|
27 16.0 1.5
|
|
|
28 17.0 1.5
|
|
|
29 18.0 1.5
|
|
|
30 19.0 1.5
|
|
|
31 20.0 1.5
|
|
|
32 21.0 1.5
|
|
|
33 22.0 1.5
|
|
|
34 23.0 1.5
|
|
|
35 24.0 1.5
|
|
|
36 25.0 1.5
|
|
|
37 26.0 1.5
|
|
|
38 27.0 1.5
|
|
|
39 28.0 1.5
|
|
|
40 29.0 1.5
|
|
|
41 30.0 1.5
|
|
|
42 31.0 1.5
|
|
|
43 32.0 1.5
|
|
|
44 33.0 1.5
|
|
|
45 34.0 1.5
|
|
|
46 35.0 1.5
|
|
|
47 36.0 1.5
|
|
|
48 37.0 1.5
|
|
|
49 38.0 1.5
|
|
|
50 39.0 1.5
|
|
|
51 40.0 1.5
|
|
|
52 41.0 1.5
|
|
|
53 42.0 1.5
|
|
|
54 43.0 1.5
|
|
|
55 44.0 1.5
|
|
|
56 45.0 1.5
|
|
|
57 46.0 1.5
|
|
|
58 47.0 1.5
|
|
|
59 48.0 1.5
|
|
|
60 49.0 1.5
|
|
|
61 50.0 1.5
|
|
|
62 51.0 1.5
|
|
|
63 52.0 1.5
|
|
|
64 53.0 1.5
|
|
|
65 54.0 1.5
|
|
|
66 55.0 1.5
|
|
|
67 56.0 1.5
|
|
|
68 57.0 1.5
|
|
|
69 58.0 1.5
|
|
|
70 59.0 1.5
|
|
|
71 60.0 1.5
|
|
|
72 61.0 1.5
|
|
|
73 62.0 1.5
|
|
|
74 63.0 1.5
|
|
|
75 64.0 1.5
|
|
|
76 65.0 1.5
|
|
|
77 66.0 1.5
|
|
|
78 67.0 1.5
|
|
|
79 68.0 1.5
|
|
|
80 69.0 1.5
|
|
|
81 70.0 1.5
|
|
|
82 71.0 1.5
|
|
|
83 72.0 1.5
|
|
|
84 73.0 1.5
|
|
|
85 74.0 1.5
|
|
|
86 75.0 1.5
|
|
|
87 76.0 1.5
|
|
|
88 77.0 1.5
|
|
|
89 78.0 1.5
|
|
|
90 79.0 1.5
|
|
|
91 80.0 1.5
|
|
|
92 81.0 1.5
|
|
|
93 82.0 1.5
|
|
|
94 83.0 1.5
|
|
|
95 84.0 1.5
|
|
|
96 85.0 1.5
|
|
|
97 86.0 1.5
|
|
|
98 87.0 1.5
|
|
|
99 88.0 1.5
|
|
|
100 89.0 1.5
|
|
|
101 90.0 1.5
|
|
|
102 91.0 1.5
|
|
|
103 92.0 1.5
|
|
|
104 93.0 1.5
|
|
|
105 94.0 1.5
|
|
|
106 95.0 1.5
|
|
|
107 96.0 1.5
|
|
|
108 97.0 1.5
|
|
|
109 98.0 1.5
|
|
|
110 99.0 1.5
|
|
|
111 100.0 1.5
|
|
|
112
|
