Mercurial > repos > devteam > picard

annotate picard_CollectHsMetrics.xml @ 30:b502c227b5e6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 0244aa33464cc27d1ce881cb310b8eda36e9a89c
author iuc
date Mon, 22 Aug 2022 09:56:00 +0000
parents b9fbec5ac6b2
children f9242e01365a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
24
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
1 <?xml version="1.0" encoding="UTF-8"?>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
2 <tool name="CollectHsMetrics" id="picard_CollectHsMetrics" version="@TOOL_VERSION@">
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
3 <description>compute metrics about datasets generated through hybrid-selection (e.g. exome)</description>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
4 <macros>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
5 <import>picard_macros.xml</import>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
6 </macros>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
7 <expand macro="requirements" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
8 <command detect_errors="exit_code"><![CDATA[
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
9 @java_options@
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
10 @symlink_element_identifier@
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
11
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
12 picard
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
13 CollectHsMetrics
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
14 INPUT='$escaped_element_identifier'
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
15 OUTPUT='${outFile}'
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
16 MINIMUM_MAPPING_QUALITY=${minimum_mapping_quality}
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
17 MINIMUM_BASE_QUALITY=${minimum_base_quality}
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
18 COVERAGE_CAP=${coverage_cap}
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
19 CLIP_OVERLAPPING_READS=${clip_overlapping_reads}
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
20 BAIT_INTERVALS='${baitFile}'
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
21 TARGET_INTERVALS='${targetFile}'
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
22 VALIDATION_STRINGENCY=${validation_stringency}
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
23 QUIET=true
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
24 VERBOSITY=ERROR
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
25 @TMPDIR_OPTION@
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
26 ]]></command>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
27 <inputs>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
28 <param name="inputFile" type="data" format="sam,bam" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
29 <param name="baitFile" type="data" format="picard_interval_list" label="An interval list file that contains the locations of the baits used" help="If empty, upload or convert from BED" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
30 <param name="targetFile" type="data" format="picard_interval_list" label="An interval list file that contains the locations of the targets" help="If empty, upload or convert from BED" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
31 <param name="minimum_mapping_quality" type="integer" value="20" label="Minimum mapping quality for a read to contribute coverage" help="MINIMUM_MAPPING_QUALITY; default=20" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
32 <param name="minimum_base_quality" type="integer" value="20" label="Minimum base quality for a base to contribute coverage" help="MINIMUM_BASE_QUALITY; default=20" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
33 <param name="coverage_cap" type="integer" value="200" label="Treat bases with coverage exceeding this value as if they had coverage at this value" help="COVERAGE_CAP; default=200" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
34 <param name="clip_overlapping_reads" type="boolean" label="Clip overlapping reads" checked="true" truevalue="true" falsevalue="false" help="CLIP_OVERLAPPING_READS; default=true" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
35 <expand macro="VS" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
36 </inputs>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
37 <outputs>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
38 <data name="outFile" format="txt" label="${tool.name} on ${on_string}: Summary data" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
39 </outputs>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
40 <tests>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
41 <test>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
42 <param name="inputFile" value="picard_CollectHsMetrics.bam" ftype="bam" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
43 <param name="baitFile" value="picard_CollectHsMetrics.baits" ftype="picard_interval_list" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
44 <param name="targetFile" value="picard_CollectHsMetrics.target" ftype="picard_interval_list" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
45 <param name="minimum_mapping_quality" value="20" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
46 <param name="minimum_base_quality" value="20" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
47 <param name="coverage_cap" value="200" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
48 <param name="clip_overlapping_reads" value="true" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
49 <output name="outFile" file="picard_CollectHsMetrics_test1.tab" lines_diff="6" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
50 </test>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
51 </tests>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
52 <help><![CDATA[
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
53 .. class:: infomark
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
54
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
55 **Purpose**
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
56
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
57 Computes a number of metrics that are useful for evaluating coverage and performance of datasets generated through hybrid-selection.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
58 Hybrid-selection (HS) is the most commonly used technique to capture exon-specific sequences for targeted sequencing experiments
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
59 such as exome sequencing.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
60
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
61 @dataset_collections@
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
62
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
63 -----
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
64
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
65 .. class:: warningmark
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
66
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
67 **Obtaining bait and target interval files in Picard interval_list format**
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
68
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
69 This tool requires an aligned SAM or BAM file as well as bait and target interval files in Picard interval_list format.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
70 You should use the bait and interval files that correspond to the capture kit that was used to generate the capture libraries
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
71 for sequencing, which can generally be obtained from the kit manufacturer.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
72 If the baits and target intervals are provided in BED format, you can convert them to the Picard interval_list format
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
73 using Picard's **BedToIntervalList** tool, which will also add the required SAM style header.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
74
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
75 @description@
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
76
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
77 MINIMUM_MAPPING_QUALITY=Integer
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
78 MQ=Integer Minimum mapping quality for a read to contribute coverage. Default value: 20.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
79
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
80 MINIMUM_BASE_QUALITY=Integer
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
81 Q=Integer Minimum base quality for a base to contribute coverage. Default value: 20.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
82
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
83 COVERAGE_CAP=Integer
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
84 CAP=Integer Treat bases with coverage exceeding this value as if they had coverage at this value.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
85 Default value: 200.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
86 CLIP_OVERLAPPING_READS=Boolean
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
87 If true, clip overlapping reads, false otherwise. Default value: true.
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
88
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
89 @more_info@
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
90 ]]></help>
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
91 <expand macro="citations" />
b9fbec5ac6b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9c268f08be6d363990a822fc941e031dd13be3f4
iuc
parents:
diff changeset
92 </tool>