Mercurial > repos > devteam > picard

annotate test-data/picard_BIS_input1.sam @ 1:e0232cbac965

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author devteam
date Thu, 25 Oct 2012 12:51:42 -0400
parents 1cd7f3b42609
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
1 @HD VN:1.0 SO:coordinate
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
2 @SQ SN:chr1 LN:101
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
3 @SQ SN:chr7 LN:404
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
4 @SQ SN:chr8 LN:202
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
5 @SQ SN:chr10 LN:303
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
6 @SQ SN:chr14 LN:505
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
7 @RG ID:0 SM:Hi,Mom!
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
8 @RG ID:1 SM:samplesample DS:ClearDescription
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
9 @PG ID:1 PN:Hey! VN:2.0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
10 @CO Just a generic comment to make the header longer
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
11 both_reads_align_clip_marked 83 chr7 1 255 101M = 302 201 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
12 both_reads_present_only_first_aligns 89 chr7 1 255 101M * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
13 read_2_too_many_gaps 83 chr7 1 255 101M = 302 201 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
14 both_reads_align_clip_adapter 147 chr7 16 255 101M = 21 -96 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
15 both_reads_align_clip_adapter 99 chr7 21 255 101M = 16 96 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
16 both_reads_align_clip_marked 163 chr7 302 255 101M = 1 -201 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
17 read_2_too_many_gaps 163 chr7 302 255 10M1D10M5I76M = 1 -201 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
18 both_reads_present_only_first_aligns 165 * 0 0 * chr7 1 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0