Mercurial > repos > devteam > picard

annotate test-data/picard_ValidateSamFile_test1.txt @ 33:3f254c5ced1d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
author iuc
date Sun, 03 Mar 2024 16:06:11 +0000
parents 3d4f1fa26f0e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
33
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
1 ERROR::MISSING_READ_GROUP:Read groups is empty
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
2 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:15130:6486, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
3 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:19193:4910, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
4 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:19687:27581, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
5 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:25123:14783, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
6 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1102:16897:10864, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
7 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1102:18180:25039, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
8 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1102:18745:16268, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
9 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1102:28904:12081, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
10 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:13486:23487, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
11 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:13545:26345, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
12 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:19673:17954, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
13 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:3642:12806, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
14 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:21319:16719, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
15 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:26456:9833, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
16 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:14672:12340, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
17 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:24128:14251, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
18 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:24520:20516, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
19 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:7598:17197, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
20 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1106:15870:27794, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
21 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1106:18833:21202, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
22 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:15130:6486, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
23 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:19193:4910, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
24 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:19687:27581, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
25 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
26 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 24, Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
27 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
28 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:25123:14783, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
29 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
30 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 28, Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
31 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
32 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1102:16897:10864, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
33 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1102:18180:25039, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
34 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1102:18745:16268, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
35 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1102:28904:12081, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
36 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
37 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 33, Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
38 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
39 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:13486:23487, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
40 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:13545:26345, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
41 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
42 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 37, Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
43 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
44 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:19673:17954, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
45 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
46 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 41, Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
47 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
48 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:3642:12806, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
49 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
50 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 43, Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
51 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
52 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
53 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 45, Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
54 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
55 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:21319:16719, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
56 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
57 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 48, Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
58 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
59 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:26456:9833, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
60 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
61 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 51, Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
62 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
iuc
parents: 5
diff changeset
63 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:14672:12340, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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64 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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65 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 54, Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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66 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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67 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:24128:14251, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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68 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:24520:20516, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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69 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1105:7598:17197, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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70 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1106:15870:27794, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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71 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1106:18833:21202, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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72 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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73 ERROR::MISMATCH_FLAG_MATE_NEG_STRAND:Record 61, Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, Mate negative strand flag does not match read negative strand flag of mate
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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parents: 5
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74 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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75 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10045:12104, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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76 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10045:12104, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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77 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10126:23848, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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78 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10126:23848, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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79 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10229:22034, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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80 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10229:22034, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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81 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10278:20774, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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82 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10278:20774, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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83 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10291:14859, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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84 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10291:14859, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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85 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10479:22035, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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86 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10479:22035, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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87 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10581:22138, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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88 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10581:22138, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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89 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10696:7547, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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90 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10696:7547, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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91 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10891:2447, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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92 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:10891:2447, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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93 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:11083:9831, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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94 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:11083:9831, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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95 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:11136:11974, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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96 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:11136:11974, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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97 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:11197:4908, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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98 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:11197:4908, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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99 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:11224:22137, A record is missing a read group
3f254c5ced1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
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100 WARNING::RECORD_MISSING_READ_GROUP:Read name M01368:28:000000000-A5KYY:1:1101:11224:22137, A record is missing a read group
5
3d4f1fa26f0e Uploaded
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101 Maximum output of [100] errors reached.