Mercurial > repos > devteam > picard

comparison picard_CollectGcBiasMetrics.xml @ 20:2a17c789e0a5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author iuc
date Tue, 19 Jun 2018 11:28:49 -0400
parents 5053a18d9bc8
children f9242e01365a
comparison
equal deleted inserted replaced
19:5053a18d9bc8 20:2a17c789e0a5
1 <tool name="CollectGcBiasMetrics" id="picard_CollectGcBiasMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> 1 <tool name="CollectGcBiasMetrics" id="picard_CollectGcBiasMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description>charts the GC bias metrics</description> 2 <description>charts the GC bias metrics</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 <token name="@WRAPPER_VERSION@">0</token> 5 <token name="@WRAPPER_VERSION@">1</token>
6 </macros> 6 </macros>
7 <expand macro="requirements"> 7 <expand macro="requirements">
8 <requirement type="package" version="3.4.1">r-base</requirement> 8 <requirement type="package" version="3.4.1">r-base</requirement>
9 </expand> 9 </expand>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
29 ASSUME_SORTED="${assume_sorted}" 29 ASSUME_SORTED="${assume_sorted}"
30 30
31 VALIDATION_STRINGENCY="${validation_stringency}" 31 VALIDATION_STRINGENCY="${validation_stringency}"
32 QUIET=true 32 QUIET=true
33 VERBOSITY=ERROR 33 VERBOSITY=ERROR
34 @TMPDIR_OPTION@
34 35
35 ]]></command> 36 ]]></command>
36 <inputs> 37 <inputs>
37 <param format="sam,bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset."/> 38 <param format="sam,bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset."/>
38 <conditional name="reference_source"> 39 <conditional name="reference_source">