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comparison picard_CollectRnaSeqMetrics.xml @ 20:2a17c789e0a5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author iuc
date Tue, 19 Jun 2018 11:28:49 -0400
parents 5053a18d9bc8
children f6ced08779c4
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equal deleted inserted replaced
19:5053a18d9bc8 20:2a17c789e0a5
1 <tool name="CollectRnaSeqMetrics" id="picard_CollectRnaSeqMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> 1 <tool name="CollectRnaSeqMetrics" id="picard_CollectRnaSeqMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description> collect metrics about the alignment of RNA to various functional classes of loci in the genome</description> 2 <description> collect metrics about the alignment of RNA to various functional classes of loci in the genome</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 <token name="@WRAPPER_VERSION@">0</token> 5 <token name="@WRAPPER_VERSION@">1</token>
6 </macros> 6 </macros>
7 <expand macro="requirements"> 7 <expand macro="requirements">
8 <requirement type="package" version="3.4.1">r-base</requirement> 8 <requirement type="package" version="3.4.1">r-base</requirement>
9 <requirement type="package" version="357">ucsc-gff3togenepred</requirement> 9 <requirement type="package" version="357">ucsc-gff3togenepred</requirement>
10 <requirement type="package" version="357">ucsc-gtftogenepred</requirement> 10 <requirement type="package" version="357">ucsc-gtftogenepred</requirement>
57 METRIC_ACCUMULATION_LEVEL="${metric_accumulation_level}" 57 METRIC_ACCUMULATION_LEVEL="${metric_accumulation_level}"
58 INPUT='$escaped_element_identifier' 58 INPUT='$escaped_element_identifier'
59 OUTPUT="${outFile}" 59 OUTPUT="${outFile}"
60 REFERENCE_SEQUENCE="${reference_fasta_filename}" 60 REFERENCE_SEQUENCE="${reference_fasta_filename}"
61 ASSUME_SORTED="${assume_sorted}" 61 ASSUME_SORTED="${assume_sorted}"
62 62 @TMPDIR_OPTION@
63 VALIDATION_STRINGENCY=${validation_stringency} 63 VALIDATION_STRINGENCY=${validation_stringency}
64 64
65 ]]></command> 65 ]]></command>
66 66
67 <inputs> 67 <inputs>