Mercurial > repos > devteam > picard

comparison picard_MeanQualityByCycle.xml @ 20:2a17c789e0a5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author iuc
date Tue, 19 Jun 2018 11:28:49 -0400
parents 5053a18d9bc8
children f9242e01365a
comparison
equal deleted inserted replaced
19:5053a18d9bc8 20:2a17c789e0a5
1 <tool name="MeanQualityByCycle" id="picard_MeanQualityByCycle" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> 1 <tool name="MeanQualityByCycle" id="picard_MeanQualityByCycle" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description>chart distribution of base qualities</description> 2 <description>chart distribution of base qualities</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 <token name="@WRAPPER_VERSION@">0</token> 5 <token name="@WRAPPER_VERSION@">1</token>
6 </macros> 6 </macros>
7 <expand macro="requirements"> 7 <expand macro="requirements">
8 <requirement type="package" version="3.4.1">r-base</requirement> 8 <requirement type="package" version="3.4.1">r-base</requirement>
9 </expand> 9 </expand>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
27 ASSUME_SORTED="${assume_sorted}" 27 ASSUME_SORTED="${assume_sorted}"
28 28
29 VALIDATION_STRINGENCY="${validation_stringency}" 29 VALIDATION_STRINGENCY="${validation_stringency}"
30 QUIET=true 30 QUIET=true
31 VERBOSITY=ERROR 31 VERBOSITY=ERROR
32 @TMPDIR_OPTION@
32 33
33 ]]></command> 34 ]]></command>
34 <inputs> 35 <inputs>
35 <param format="sam,bam" name="inputFile" type="data" label="SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset."/> 36 <param format="sam,bam" name="inputFile" type="data" label="SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset."/>
36 <conditional name="reference_source"> 37 <conditional name="reference_source">