Mercurial > repos > devteam > picard
comparison picard_ReorderSam.xml @ 8:3a3234d7a2e8 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
| author | devteam |
|---|---|
| date | Thu, 16 Jul 2015 15:53:10 -0400 |
| parents | 3d4f1fa26f0e |
| children | 05087b27692a |
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| 7:379fdf4c41ac | 8:3a3234d7a2e8 |
|---|---|
| 1 <tool name="ReorderSam" id="picard_ReorderSam" version="1.126.0"> | 1 <tool name="ReorderSam" id="picard_ReorderSam" version="@TOOL_VERSION@.0"> |
| 2 <description>reorder reads to match ordering in reference sequences</description> | 2 <description>reorder reads to match ordering in reference sequences</description> |
| 3 <requirements><requirement type="package" version="1.126.0">picard</requirement></requirements> | |
| 4 | |
| 5 <macros> | 3 <macros> |
| 6 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
| 7 </macros> | 5 </macros> |
| 8 | 6 <expand macro="requirements" /> |
| 9 <command> | 7 <command> |
| 10 @java_options@ | 8 @java_options@ |
| 11 #set $picard_dict = "localref.dict" | 9 #set $picard_dict = "localref.dict" |
| 12 #set $ref_fasta = "localref.fa" ## This is done because picards "likes" .fa extension | 10 #set $ref_fasta = "localref.fa" ## This is done because picards "likes" .fa extension |
| 13 | 11 |