Mercurial > repos > devteam > picard

comparison test-data/picard_MeanQualityByCycle_test1.tab @ 5:3d4f1fa26f0e draft

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author devteam
date Tue, 16 Dec 2014 19:03:21 -0500
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4:ab1f60c26526 5:3d4f1fa26f0e
1 ## htsjdk.samtools.metrics.StringHeader
2 # picard.analysis.MeanQualityByCycle CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_924.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INPUT=/Users/anton/galaxy-central/database/files/000/dataset_882.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_923.dat REFERENCE_SEQUENCE=localref.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
3 ## htsjdk.samtools.metrics.StringHeader
4 # Started on: Mon Oct 13 16:54:21 EDT 2014
5
6
7 ## HISTOGRAM java.lang.Integer
8 CYCLE MEAN_QUALITY
9 1 30.92
10 2 32.06
11 3 31.93
12 4 32.2
13 5 32.11
14 6 35.73
15 7 35.77
16 8 35.93
17 9 34.98
18 10 35.63
19 11 35.38
20 12 36.14
21 13 37.72
22 14 37.39
23 15 37.27
24 16 37.29
25 17 37.21
26 18 37.13
27 19 37.28
28 20 36.9
29 21 37.12
30 22 36.77
31 23 37.81
32 24 37.64
33 25 38.32
34 26 38.15
35 27 37.97
36 28 37.8
37 29 37.86
38 30 37.85
39 31 38.21
40 32 38.36
41 33 38.24
42 34 38.2
43 35 38.04
44 36 37.52
45 37 37.68
46 38 38.12
47 39 37.46
48 40 37.66
49 41 37.23
50 42 37.25
51 43 37.28
52 44 37.61
53 45 37.49
54 46 37.67
55 47 38.02
56 48 37.43
57 49 37.91
58 50 38.02
59 51 38.01
60 52 37.97
61 53 37.53
62 54 37.46
63 55 37.83
64 56 37.38
65 57 37.54
66 58 37.39
67 59 37.69
68 60 37.99
69 61 37.65
70 62 37.19
71 63 38.03
72 64 37.54
73 65 38.06
74 66 37.6
75 67 37.17
76 68 37.91
77 69 37.51
78 70 37.97
79 71 37.78
80 72 37.88
81 73 37.54
82 74 36.84
83 75 37.3
84 76 37.89
85 77 37.64
86 78 37.54
87 79 37.73
88 80 37.23
89 81 36.97
90 82 37.45
91 83 36.68
92 84 36.87
93 85 36.82
94 86 37.47
95 87 37.18
96 88 37.42
97 89 37.4
98 90 36.42
99 91 37.12
100 92 37.63
101 93 37.37
102 94 37.38
103 95 37.55
104 96 37.84
105 97 38.14
106 98 37.42
107 99 38.12
108 100 36.51
109 101 36.54
110 102 37.02
111 103 36.53
112 104 37.57
113 105 37.4
114 106 37.28
115 107 37.32
116 108 37.44
117 109 37.4
118 110 36.82
119 111 37.73
120 112 37.42
121 113 37.53
122 114 36.52
123 115 36.44
124 116 36.06
125 117 37.45
126 118 36.9
127 119 36.53
128 120 37.15
129 121 36.28
130 122 37.27
131 123 37.05
132 124 37.34
133 125 35.58
134 126 36.2
135 127 36.72
136 128 36.17
137 129 36.99
138 130 36.39
139 131 37.17
140 132 36.61
141 133 36.34
142 134 36.7
143 135 36.18
144 136 36.07
145 137 37.15
146 138 36.16
147 139 35.52
148 140 36.35
149 141 36.77
150 142 35.8
151 143 36.47
152 144 36.07
153 145 36.32
154 146 36.53
155 147 36.16
156 148 35.99
157 149 35.58
158 150 35.99
159 151 35.37
160 152 34.34
161 153 34.51
162 154 35.34
163 155 35.83
164 156 36.26
165 157 36.28
166 158 36.68
167 159 36.18
168 160 36.44
169 161 35.34
170 162 34.81
171 163 35.58
172 164 35.72
173 165 35.63
174 166 36.01
175 167 35.22
176 168 35.82
177 169 35.29
178 170 35
179 171 35.46
180 172 34.78
181 173 34.54
182 174 33.67
183 175 34.51
184 176 34.47
185 177 35.38
186 178 34.74
187 179 35.6
188 180 34.5
189 181 34.27
190 182 34.26
191 183 35.11
192 184 34.54
193 185 33.99
194 186 33.22
195 187 33.8
196 188 33.43
197 189 34.4
198 190 32.97
199 191 33.59
200 192 33.29
201 193 32.52
202 194 34.05
203 195 33.54
204 196 32.56
205 197 33.88
206 198 33.03
207 199 32.74
208 200 31.84
209 201 33.09
210 202 32.95
211 203 32.85
212 204 33.79
213 205 33.35
214 206 33.05
215 207 32.71
216 208 32.83
217 209 32.76
218 210 31.26
219 211 31.29
220 212 32.19
221 213 33.79
222 214 33.22
223 215 32.27
224 216 32.03
225 217 31.8
226 218 32.67
227 219 32.57
228 220 32.32
229 221 31.24
230 222 31.27
231 223 31.22
232 224 31.59
233 225 30.77
234 226 30.36
235 227 30.66
236 228 30.16
237 229 30.91
238 230 32.04
239 231 32.24
240 232 32.04
241 233 30.92
242 234 30.78
243 235 31.59
244 236 31.73
245 237 32.32
246 238 30.25
247 239 29.03
248 240 29.61
249 241 30.03
250 242 29.38
251 243 28.82
252 244 29.32
253 245 28.41
254 246 28.49
255 247 29.24
256 248 29.71
257 249 29.51
258 250 28.9
259 251 20.13
260 252 32.02
261 253 33.03
262 254 33.14
263 255 33.32
264 256 32.92
265 257 35.86
266 258 36.02
267 259 35.97
268 260 35.76
269 261 36.03
270 262 35.9
271 263 36.35
272 264 37.5
273 265 37.28
274 266 37.61
275 267 37.7
276 268 37.66
277 269 37.48
278 270 37.68
279 271 37.59
280 272 37.66
281 273 37.73
282 274 38.05
283 275 38.42
284 276 38.12
285 277 38.37
286 278 38.41
287 279 38.32
288 280 38.39
289 281 38.2
290 282 38.26
291 283 38.34
292 284 38.22
293 285 38.37
294 286 38.33
295 287 38.39
296 288 38.17
297 289 38.1
298 290 38.16
299 291 37.86
300 292 37.77
301 293 38.23
302 294 37.79
303 295 37.64
304 296 38.02
305 297 37.77
306 298 38.2
307 299 38.02
308 300 37.83
309 301 38.26
310 302 38.2
311 303 38.04
312 304 37.86
313 305 38.14
314 306 38.25
315 307 37.88
316 308 38.39
317 309 38.3
318 310 37.82
319 311 37.71
320 312 38.23
321 313 38.07
322 314 38.06
323 315 37.71
324 316 37.92
325 317 37.78
326 318 37.89
327 319 37.37
328 320 37.2
329 321 37.59
330 322 37.88
331 323 37.35
332 324 37.8
333 325 37.11
334 326 37.34
335 327 36.97
336 328 37.34
337 329 37.27
338 330 37.6
339 331 37.4
340 332 37.31
341 333 37.57
342 334 37.12
343 335 37.46
344 336 37.45
345 337 37.47
346 338 37.27
347 339 37.62
348 340 37.6
349 341 37.78
350 342 37.51
351 343 37.81
352 344 37.92
353 345 37.86
354 346 37.22
355 347 37.75
356 348 37.5
357 349 37.12
358 350 37.2
359 351 36.71
360 352 37.26
361 353 37.27
362 354 37.96
363 355 38
364 356 37.49
365 357 37.61
366 358 36.68
367 359 37.02
368 360 37.23
369 361 36.35
370 362 36.78
371 363 36.51
372 364 36.98
373 365 36.74
374 366 36.98
375 367 36.4
376 368 36.89
377 369 37.09
378 370 36.85
379 371 36.94
380 372 37.03
381 373 37.27
382 374 36.99
383 375 37.22
384 376 36.68
385 377 37.01
386 378 37.16
387 379 36.63
388 380 37.02
389 381 36.7
390 382 37.36
391 383 36.97
392 384 36.61
393 385 36.4
394 386 36.31
395 387 36.38
396 388 36.57
397 389 36.17
398 390 35.9
399 391 36.52
400 392 36.31
401 393 35.73
402 394 35.6
403 395 35.14
404 396 35.58
405 397 34.47
406 398 36.4
407 399 36.35
408 400 35.78
409 401 35.94
410 402 36.15
411 403 35.06
412 404 34.94
413 405 35.2
414 406 35.3
415 407 35.66
416 408 36.08
417 409 35.26
418 410 35.19
419 411 35.12
420 412 34.92
421 413 35.04
422 414 34.72
423 415 35.31
424 416 35.41
425 417 35.76
426 418 34.93
427 419 34.61
428 420 31.67
429 421 33.03
430 422 34.43
431 423 33.21
432 424 34.64
433 425 34.09
434 426 33.68
435 427 33.42
436 428 33.14
437 429 34.06
438 430 33.51
439 431 33.3
440 432 34.18
441 433 34.35
442 434 34.16
443 435 34.4
444 436 33.83
445 437 32.62
446 438 32.52
447 439 32.2
448 440 31.23
449 441 30.53
450 442 31.09
451 443 31.4
452 444 32.42
453 445 32.48
454 446 32.09
455 447 32.82
456 448 32.44
457 449 31.59
458 450 31.29
459 451 31.51
460 452 31.44
461 453 29.73
462 454 30.59
463 455 31.49
464 456 29.87
465 457 30.48
466 458 30.45
467 459 31.44
468 460 29.87
469 461 30.61
470 462 30.39
471 463 30.65
472 464 28.86
473 465 28.55
474 466 28.77
475 467 30
476 468 30.1
477 469 30.27
478 470 31.21
479 471 30.62
480 472 31.14
481 473 29.87
482 474 28.56
483 475 28.48
484 476 29.52
485 477 28.14
486 478 28.27
487 479 28.02
488 480 28.57
489 481 27.39
490 482 28.5
491 483 28.68
492 484 27.18
493 485 27.42
494 486 27.09
495 487 25.93
496 488 27.18
497 489 26.68
498 490 26.65
499 491 26.27
500 492 25.41
501 493 25.3
502 494 26.21
503 495 26.68
504 496 26.32
505 497 25.83
506 498 24.29
507 499 24.26
508 500 24.58
509 501 24.86
510 502 19.15
511