Mercurial > repos > devteam > picard

comparison test-data/picard_ValidateSamFile_test1.txt @ 5:3d4f1fa26f0e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author devteam
date Tue, 16 Dec 2014 19:03:21 -0500
parents
children 3f254c5ced1d
comparison
equal deleted inserted replaced
4:ab1f60c26526 5:3d4f1fa26f0e
1 ERROR: Read groups is empty
2 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:15130:6486, A record is missing a read group
3 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:19193:4910, A record is missing a read group
4 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:19687:27581, A record is missing a read group
5 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:25123:14783, A record is missing a read group
6 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:16897:10864, A record is missing a read group
7 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:18180:25039, A record is missing a read group
8 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:18745:16268, A record is missing a read group
9 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:28904:12081, A record is missing a read group
10 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13486:23487, A record is missing a read group
11 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13545:26345, A record is missing a read group
12 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:19673:17954, A record is missing a read group
13 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:3642:12806, A record is missing a read group
14 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:21319:16719, A record is missing a read group
15 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:26456:9833, A record is missing a read group
16 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:14672:12340, A record is missing a read group
17 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:24128:14251, A record is missing a read group
18 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:24520:20516, A record is missing a read group
19 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:7598:17197, A record is missing a read group
20 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:15870:27794, A record is missing a read group
21 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:18833:21202, A record is missing a read group
22 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:15130:6486, A record is missing a read group
23 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:19193:4910, A record is missing a read group
24 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:19687:27581, A record is missing a read group
25 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, A record is missing a read group
26 ERROR: Record 24, Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, Mate negative strand flag does not match read negative strand flag of mate
27 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, A record is missing a read group
28 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:25123:14783, A record is missing a read group
29 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, A record is missing a read group
30 ERROR: Record 28, Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, Mate negative strand flag does not match read negative strand flag of mate
31 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, A record is missing a read group
32 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:16897:10864, A record is missing a read group
33 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:18180:25039, A record is missing a read group
34 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:18745:16268, A record is missing a read group
35 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:28904:12081, A record is missing a read group
36 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, A record is missing a read group
37 ERROR: Record 33, Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, Mate negative strand flag does not match read negative strand flag of mate
38 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, A record is missing a read group
39 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13486:23487, A record is missing a read group
40 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13545:26345, A record is missing a read group
41 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, A record is missing a read group
42 ERROR: Record 37, Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, Mate negative strand flag does not match read negative strand flag of mate
43 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, A record is missing a read group
44 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:19673:17954, A record is missing a read group
45 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, A record is missing a read group
46 ERROR: Record 41, Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, Mate negative strand flag does not match read negative strand flag of mate
47 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, A record is missing a read group
48 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:3642:12806, A record is missing a read group
49 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, A record is missing a read group
50 ERROR: Record 43, Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, Mate negative strand flag does not match read negative strand flag of mate
51 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, A record is missing a read group
52 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, A record is missing a read group
53 ERROR: Record 45, Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, Mate negative strand flag does not match read negative strand flag of mate
54 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, A record is missing a read group
55 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:21319:16719, A record is missing a read group
56 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, A record is missing a read group
57 ERROR: Record 48, Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, Mate negative strand flag does not match read negative strand flag of mate
58 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, A record is missing a read group
59 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:26456:9833, A record is missing a read group
60 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, A record is missing a read group
61 ERROR: Record 51, Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, Mate negative strand flag does not match read negative strand flag of mate
62 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, A record is missing a read group
63 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:14672:12340, A record is missing a read group
64 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, A record is missing a read group
65 ERROR: Record 54, Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, Mate negative strand flag does not match read negative strand flag of mate
66 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, A record is missing a read group
67 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:24128:14251, A record is missing a read group
68 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:24520:20516, A record is missing a read group
69 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:7598:17197, A record is missing a read group
70 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:15870:27794, A record is missing a read group
71 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:18833:21202, A record is missing a read group
72 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, A record is missing a read group
73 ERROR: Record 61, Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, Mate negative strand flag does not match read negative strand flag of mate
74 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, A record is missing a read group
75 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10045:12104, A record is missing a read group
76 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10045:12104, A record is missing a read group
77 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10126:23848, A record is missing a read group
78 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10126:23848, A record is missing a read group
79 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10229:22034, A record is missing a read group
80 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10229:22034, A record is missing a read group
81 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10278:20774, A record is missing a read group
82 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10278:20774, A record is missing a read group
83 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10291:14859, A record is missing a read group
84 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10291:14859, A record is missing a read group
85 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10479:22035, A record is missing a read group
86 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10479:22035, A record is missing a read group
87 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10581:22138, A record is missing a read group
88 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10581:22138, A record is missing a read group
89 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10696:7547, A record is missing a read group
90 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10696:7547, A record is missing a read group
91 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10891:2447, A record is missing a read group
92 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10891:2447, A record is missing a read group
93 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11083:9831, A record is missing a read group
94 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11083:9831, A record is missing a read group
95 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11136:11974, A record is missing a read group
96 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11136:11974, A record is missing a read group
97 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11197:4908, A record is missing a read group
98 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11197:4908, A record is missing a read group
99 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11224:22137, A record is missing a read group
100 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11224:22137, A record is missing a read group
101 Maximum output of [100] errors reached.